Junbo Duan

Publication Activity (10 Years)

Years Active: 2011-2024
Publications (10 Years): 16

Top Topics

Lambertian Reflectance

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Briefings Bioinform.

IEEE Trans. Biomed. Eng.

Publications

Junbo Duan, Xinrui Zhao, Xiaoming Wu
LoRA-TV: read depth profile-based clustering of tumor cells in single-cell sequencing. Briefings Bioinform. 25 (4) (2024)
Yibo Zhang, Wenyu Liu, Junbo Duan
On the core segmentation algorithms of copy number variation detection tools. Briefings Bioinform. 25 (2) (2024)
Fanding Xu, Junbo Duan, Wenyu Liu
Comparative study of non-convex penalties and related algorithms in compressed sensing. Digit. Signal Process. 135 (2023)
Jian Yang, Yanmin Shuai, Junbo Duan, Donghui Xie, Qingling Zhang, Ruishan Zhao
Impact of BRDF Spatiotemporal Smoothing on Land Surface Albedo Estimation. Remote. Sens. 14 (9) (2022)
Xiguo Yuan, Jiaao Yu, Jianing Xi, Liying Yang, Junliang Shang, Zhe Li, Junbo Duan
CNV_IFTV: An Isolation Forest and Total Variation-Based Detection of CNVs from Short-Read Sequencing Data. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (2) (2021)
Xiguo Yuan, Xiangyan Xu, Haiyong Zhao, Junbo Duan
ERINS: Novel Sequence Insertion Detection by Constructing an Extended Reference. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (5) (2021)
Wenyu Liu, Hao Yan, Qing Wang, Nan Hu, Ni Liu, Fanding Xu, Junbo Duan
Smoothing of Time-Varying Graph With the Generalized LASSO. IEEE Access 9 (2021)
Junbo Duan, Qing Wang, Yu-Ping Wang
HOPS: A Fast Algorithm for Segmenting Piecewise Polynomials of Arbitrary Orders. IEEE Access 9 (2021)
Guojun Liu, Xiguo Yuan, Junying Zhang, Haiyong Zhao, Junping Li, Junbo Duan
CRSCNV: A Cross-Model-Based Statistical Approach to Detect Copy Number Variations in Sequence Data. IEEE Access 8 (2020)
Lanling Zhao, Han Liu, Xiguo Yuan, Kun Gao, Junbo Duan
Comparative study of whole exome sequencing-based copy number variation detection tools. BMC Bioinform. 21 (1) (2020)
Xiguo Yuan, Jun Bai, Junying Zhang, Liying Yang, Junbo Duan, Yaoyao Li, Meihong Gao
CONDEL: Detecting Copy Number Variation and Genotyping Deletion Zygosity from Single Tumor Samples Using Sequence Data. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (4) (2020)
Xiguo Yuan, Meihong Gao, Jun Bai, Junbo Duan
SVSR: A Program to Simulate Structural Variations and Generate Sequencing Reads for Multiple Platforms. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (3) (2020)
Junbo Duan, Charles Soussen, David Brie, Jérôme Idier, Yu-Ping Wang, Mingxi Wan
A Parallelizable Framework for Segmenting Piecewise Signals. IEEE Access 7 (2019)
Junbo Duan, Jérôme Idier, Yu-Ping Wang, Mingxi Wan
A Joint Least Squares and Least Absolute Deviation Model. IEEE Signal Process. Lett. 26 (4) (2019)
Junbo Duan, Charles Soussen, David Brie, Jérôme Idier, Mingxi Wan, Yu-Ping Wang
Generalized LASSO with under-determined regularization matrices. Signal Process. 127 (2016)
Junbo Duan, Mingxi Wan, Hong-Wen Deng, Yu-Ping Wang
A Sparse Model Based Detection of Copy Number Variations From Exome Sequencing Data. IEEE Trans. Biomed. Eng. 63 (3) (2016)
Junbo Duan, Charles Soussen, David Brie, Jérôme Idier, Yu-Ping Wang, Mingxi Wan
An optimal method to segment piecewise poisson distributed signals with application to sequencing data. EMBC (2015)
Charles Soussen, Jérôme Idier, Junbo Duan, David Brie
-Regularized Least-Squares. IEEE Trans. Signal Process. 63 (13) (2015)
Charles Soussen, Jérôme Idier, Junbo Duan, David Brie
regularization path tracking algorithms. CoRR (2014)
Hongbao Cao, Junbo Duan, Dongdong Lin, Yin Yao Shugart, Vince D. Calhoun, Yu-Ping Wang
Sparse representation based biomarker selection for schizophrenia with integrated analysis of fMRI and SNPs. NeuroImage 102 (2014)
Junbo Duan, Hong-Wen Deng, Yu-Ping Wang
Common Copy Number Variation Detection From Multiple Sequenced Samples. IEEE Trans. Biomed. Eng. 61 (3) (2014)
Junbo Duan, Ji-Gang Zhang, Mingxi Wan, Hong-Wen Deng, Yu-Ping Wang
Population clustering based on copy number variations detected from next generation sequencing data. J. Bioinform. Comput. Biol. 12 (4) (2014)
Junbo Duan, Mingxi Wan, Hong-Wen Deng, Yu-Ping Wang
Modeling exome sequencing data with generalized Gaussian distribution with application to copy number variation detection. BIBM (2013)
Wenlong Tang, Junbo Duan, Ji-Gang Zhang, Yu-Ping Wang
Subtyping glioblastoma by combining miRNA and mRNA expression data using compressed sensing-based approach. EURASIP J. Bioinform. Syst. Biol. 2013 (2013)
Junbo Duan, Ji-Gang Zhang, Hong-Wen Deng, Yu-Ping Wang
CNV-TV: A robust method to discover copy number variation from short sequencing reads. BMC Bioinform. 14 (2013)
Hongbao Cao, Junbo Duan, Dongdong Lin, Vincent D. Calhoun, Yu-Ping Wang
Sparse representation based biomarker selection for schizophrenia with integrated analysis of fMRI and SNP data. ISBI (2013)
Junbo Duan, Charles Soussen, David Brie, Jérôme Idier, Yu-Ping Wang
On LARS/Homotopy Equivalence Conditions for Over-Determined LASSO. IEEE Signal Process. Lett. 19 (12) (2012)
Junbo Duan, Ji-Gang Zhang, Hongbao Cao, Hong-Wen Deng, Yu-Ping Wang
Copy number variation estimation from multiple next-generation sequencing samples. BCB (2012)
Hongbao Cao, Dongdong Lin, Junbo Duan, Yu-Ping Wang, Vince D. Calhoun
Bio marker identification for diagnosis of schizophrenia with integrated analysis of fMRI and SNPs. BIBM (2012)
Junbo Duan, Ji-Gang Zhang, Hong-Wen Deng, Yu-Ping Wang
Detection of common copy number variation with application to population clustering from next generation sequencing data. EMBC (2012)
Hongbao Cao, Junbo Duan, Dongdong Lin, Yu-Ping Wang
Sparse Representation Based Clustering for Integrated Analysis of Gene Copy Number Variation and Gene Expression Date. Int. J. Comput. Their Appl. 19 (2) (2012)
Wenlong Tang, Hongbao Cao, Junbo Duan, Yu-Ping Wang
A Compressed Sensing Based Approach for Subtyping of Leukemia from gene Expression Data. J. Bioinform. Comput. Biol. 9 (5) (2011)
Junbo Duan, Charles Soussen, David Brie, Jérôme Idier, Yu-Ping Wang
A sufficient condition on monotonic increase of the number of nonzero entry in the optimizer of L1 norm penalized least-square problem. CoRR (2011)
Wenlong Tang, Hongbao Cao, Ji-Gang Zhang, Junbo Duan, Dongdong Lin, Yu-Ping Wang
Classifying six glioma subtypes from combined gene expression and CNVs data based on compressive sensing approach. BIBM Workshops (2011)
Junbo Duan, Ji-Gang Zhang, John Lefante, Hong-Wen Deng, Yu-Ping Wang
Detection of copy number variation from next generation sequencing data with total variation penalized least square optimization. BIBM Workshops (2011)
Charles Soussen, Jérôme Idier, David Brie, Junbo Duan
From Bernoulli-Gaussian Deconvolution to Sparse Signal Restoration. IEEE Trans. Signal Process. 59 (10) (2011)