Ao Li

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 59

Top Topics

Protein Interaction

Matrix Factorization

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Honglei Liu, Yi Shi, Ao Li, Minghui Wang
Multi-modal fusion network with intra- and inter-modality attention for prognosis prediction in breast cancer. Comput. Biol. Medicine 168 (2024)
Zhi Wang, Kai Fan, Xiaoya Zhu, Honglei Liu, Gang Meng, Minghui Wang, Ao Li
Cross-Domain Nuclei Detection in Histopathology Images Using Graph-Based Nuclei Feature Alignment. IEEE J. Biomed. Health Informatics 28 (1) (2024)
Xingqi Wu, Yi Shi, Minghui Wang, Ao Li
CAMR: cross-aligned multimodal representation learning for cancer survival prediction. Bioinform. 39 (1) (2023)
Yin Luo, Wei Liu, Tao Fang, Qilong Song, Xuhong Min, Minghui Wang, Ao Li
CARL: Cross-Aligned Representation Learning for Multi-view Lung Cancer Histology Classification. MICCAI (5) (2023)
Lei Su, Zhi Wang, Yi Shi, Ao Li, Minghui Wang
Local augmentation based consistency learning for semi-supervised pathology image classification. Comput. Methods Programs Biomed. 232 (2023)
Ying Xu, Honglei Liu, Yi Shi, Ao Li, Minghui Wang
Cancer Survival Prediction by Multimodal Disentangled Representation Learning. MLNLP (2023)
Ziyu Gao, Yin Luo, Ying Xu, Ao Li, Minghui Wang
Multi-view Representation Learning for Histologic Subtype Classification of Lung Cancer. MLNLP (2023)
Chenchen Tian, Lei Su, Zhi Wang, Ao Li, Minghui Wang
Semi-Supervised Nuclei Detection in Histopathology Images via Location-Aware Adversarial Image Reconstruction. IEEE Access 10 (2022)
Dongqi Gui, Qilong Song, Biao Song, Haichun Li, Minghui Wang, Xuhong Min, Ao Li
AIR-Net: A novel multi-task learning method with auxiliary image reconstruction for predicting EGFR mutation status on CT images of NSCLC patients. Comput. Biol. Medicine 141 (2022)
Haichun Li, Qilong Song, Dongqi Gui, Minghui Wang, Xuhong Min, Ao Li
Reconstruction-Assisted Feature Encoding Network for Histologic Subtype Classification of Non-Small Cell Lung Cancer. IEEE J. Biomed. Health Informatics 26 (9) (2022)
Zhi Wang, Xiaoya Zhu, Ao Li, Yuan Wang, Gang Meng, Minghui Wang
Global and local attentional feature alignment for domain adaptive nuclei detection in histopathology images. Artif. Intell. Medicine 132 (2022)
Yu Liu, Ao Li, Jiangshu Liu, Gang Meng, Minghui Wang
TSDLPP: A Novel Two-Stage Deep Learning Framework For Prognosis Prediction Based on Whole Slide Histopathological Images. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (4) (2022)
Xingqi Wu, Yi Shi, Honglei Liu, Ao Li, Minghui Wang
Learning Comprehensive Multimodal Representation for Cancer Survival Prediction. MLNLP (2022)
Hangyuan Yang, Minghui Wang, Xia Liu, Xing-Ming Zhao, Ao Li
PhosIDN: an integrated deep neural network for improving protein phosphorylation site prediction by combining sequence and protein-protein interaction information. Bioinform. 37 (24) (2021)
Lei Su, Yu Liu, Minghui Wang, Ao Li
Semi-HIC: A novel semi-supervised deep learning method for histopathological image classification. Comput. Biol. Medicine 137 (2021)
Jianteng Zhou, Jianing Gao, Huan Zhang, Daren Zhao, Ao Li, Furhan Iqbal, Qinghua Shi, Yuanwei Zhang
PedMiner: a tool for linkage analysis-based identification of disease-associated variants using family based whole-exome sequencing data. Briefings Bioinform. 22 (3) (2021)
Maomao Zhang, Ao Li, Honglei Liu, Minghui Wang
Coarse-to-Fine Hand-Object Pose Estimation with Interaction-Aware Graph Convolutional Network. Sensors 21 (23) (2021)
Zhi Wang, Xiaoya Zhu, Lei Su, Gang Meng, Junsheng Zhang, Ao Li, Minghui Wang
Instance-Aware Feature Alignment for Cross-Domain Cell Nuclei Detection in Histopathology Images. MICCAI (8) (2021)
Hailuo Song, Ao Li, Tong Wang, Minghui Wang
Multimodal Deep Reinforcement Learning with Auxiliary Task for Obstacle Avoidance of Indoor Mobile Robot. Sensors 21 (4) (2021)
Ao Li, Jikai Wang, Meng Xu, Zonghai Chen
DP-SLAM: A visual SLAM with moving probability towards dynamic environments. Inf. Sci. 556 (2021)
Daobin Huang, Minghui Wang, Ling Zhang, Haichun Li, Minquan Ye, Ao Li
Learning rich features with hybrid loss for brain tumor segmentation. BMC Medical Informatics Decis. Mak. (2) (2021)
Zhiqin Wang, Ruiqing Li, Minghui Wang, Ao Li
GPDBN: deep bilinear network integrating both genomic data and pathological images for breast cancer prognosis prediction. Bioinform. 37 (18) (2021)
Zhenhua Yu, Fang Du, Xuehong Sun, Ao Li
SCSsim: an integrated tool for simulating single-cell genome sequencing data. Bioinform. 36 (4) (2020)
Ya Zhang, Ao Li, Jie He, Minghui Wang
A Novel MKL Method for GBM Prognosis Prediction by Integrating Histopathological Image and Multi-Omics Data. IEEE J. Biomed. Health Informatics 24 (1) (2020)
Tianyi Zhang, Minghui Wang, Jianing Xi, Ao Li
LPGNMF: Predicting Long Non-Coding RNA and Protein Interaction Using Graph Regularized Nonnegative Matrix Factorization. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (1) (2020)
Hang Yang, Minghui Wang, Zhenhua Yu, Xing-Ming Zhao, Ao Li
GANcon: Protein Contact Map Prediction With Deep Generative Adversarial Network. IEEE Access 8 (2020)
Jianing Xi, Xiguo Yuan, Minghui Wang, Ao Li, Xuelong Li, Qinghua Huang
Inferring subgroup-specific driver genes from heterogeneous cancer samples via subspace learning with subgroup indication. Bioinform. 36 (6) (2020)
Hang Wang, Jianing Xi, Minghui Wang, Ao Li
Dual-Layer Strengthened Collaborative Topic Regression Modeling for Predicting Drug Sensitivity. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (2) (2020)
Jianing Xi, Ao Li, Minghui Wang
HetRCNA: A Novel Method to Identify Recurrent Copy Number Alternations from Heterogeneous Tumor Samples Based on Matrix Decomposition Framework. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (2) (2020)
Bo Tang, Ao Li, Bin Li, Minghui Wang
CapSurv: Capsule Network for Survival Analysis With Whole Slide Pathological Images. IEEE Access 7 (2019)
Haichun Li, Ao Li, Minghui Wang
A novel end-to-end brain tumor segmentation method using improved fully convolutional networks. Comput. Biol. Medicine 108 (2019)
Jiayuan Zhang, Ao Li, Yu Liu, Minghui Wang
Adversarially Regularized U-Net-based GANs for Facial Attribute Modification and Generation. IEEE Access 7 (2019)
Fenglin Luo, Minghui Wang, Yu Liu, Xing-Ming Zhao, Ao Li
DeepPhos: prediction of protein phosphorylation sites with deep learning. Bioinform. 35 (16) (2019)
Tinghong Zhang, Ao Li, Minghui Wang, Xiaodong Wu, Bensheng Qiu
Multiple Attention Fully Convolutional Network For Automated Ventricle Segmentation in Cardiac Magnetic Resonance Imaging. J. Medical Imaging Health Informatics 9 (5) (2019)
Aoshuang Zhang, Ao Li, Jie He, Minghui Wang
LSCDFS-MKL: A multiple kernel based method for lung squamous cell carcinomas disease-free survival prediction with pathological and genomic data. J. Biomed. Informatics 94 (2019)
Dongdong Sun, Minghui Wang, Ao Li
A Multimodal Deep Neural Network for Human Breast Cancer Prognosis Prediction by Integrating Multi-Dimensional Data. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (3) (2019)
Jianghong Yang, Ao Li, Yongqiang Li, Xiangqian Guo, Minghui Wang
A novel approach for drug response prediction in cancer cell lines via network representation learning. Bioinform. 35 (9) (2019)
Zhenhua Yu, Ao Li, Liang Zou, Xuehong Sun, Minghui Wang, Peng Zhang
Integrated Modeling of GC-Content, Mappability, Tumor Impurity and Aneuploidy for Accurate Detection of Genomic Aberrations. IEEE Access 6 (2018)
Jianing Xi, Ao Li, Minghui Wang
An efficient nonnegative matrix factorization model for finding cancer associated genes by integrating data from genome, transcriptome and interactome. CISS (2018)
Dongdong Sun, Ao Li, Bo Tang, Minghui Wang
Integrating genomic data and pathological images to effectively predict breast cancer clinical outcome. Comput. Methods Programs Biomed. 161 (2018)
Jianing Xi, Ao Li, Minghui Wang
A novel unsupervised learning model for detecting driver genes from pan-cancer data through matrix tri-factorization framework with pairwise similarities constraints. Neurocomputing 296 (2018)
Jianing Xi, Minghui Wang, Ao Li
Discovering mutated driver genes through a robust and sparse co-regularized matrix factorization framework with prior information from mRNA expression patterns and interaction network. BMC Bioinform. 19 (1) (2018)
Dongdong Sun, Minghui Wang, Ao Li
MPTM: A tool for mining protein post-translational modifications from literature. J. Bioinform. Comput. Biol. 15 (5) (2017)
Jianing Xi, Minghui Wang, Ao Li
DGPathinter: a novel model for identifying driver genes via knowledge-driven matrix factorization with prior knowledge from interactome and pathways. PeerJ Comput. Sci. 3 (2017)
Chen Peng, Ao Li
A Heterogeneous Network Based Method for Identifying GBM-Related Genes by Integrating Multi-Dimensional Data. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (3) (2017)
Xiaocheng Liu, Jianing Xi, Changran Zhang, Huanqing Feng, Ao Li, Minghui Wang
Identification of driver network modules in protein-protein interaction network using patient mutation profiles. CISP-BMEI (2017)
Jianing Gao, Changlin Wan, Huan Zhang, Ao Li, Qiguang Zang, Rongjun Ban, Asim Ali, Zhenghua Yu, Qinghua Shi, Xiaohua Jiang, Yuanwei Zhang
Anaconda: AN automated pipeline for somatic COpy Number variation Detection and Annotation from tumor exome sequencing data. BMC Bioinform. 18 (1) (2017)
Dongdong Sun, Minghui Wang, Huanqing Feng, Ao Li
Prognosis prediction of human breast cancer by integrating deep neural network and support vector machine: Supervised feature extraction and classification for breast cancer prognosis prediction. CISP-BMEI (2017)
Jianghong Yang, Ao Li, Mengqu Ge, Minghui Wang
Relevance search for predicting lncRNA-protein interactions based on heterogeneous network. Neurocomputing 206 (2016)
Ao Li, Xing-Ming Zhao, Shuigeng Zhou
Data mining in systems biology. Neurocomputing 206 (2016)
Yi Shen, Heming Yao, Ao Li, Minghui Wang
CSCdb: a cancer stem cells portal for markers, related genes and functional information. Database J. Biol. Databases Curation 2016 (2016)
Yuanwei Zhang, Qiguang Zang, Huan Zhang, Rongjun Ban, Yifan Yang, Furhan Iqbal, Ao Li, Qinghua Shi
DeAnnIso: a tool for online detection and annotation of isomiRs from small RNA sequencing data. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Jianing Xi, Ao Li
Discovering Recurrent Copy Number Aberrations in Complex Patterns via Non-Negative Sparse Singular Value Decomposition. IEEE ACM Trans. Comput. Biol. Bioinform. 13 (4) (2016)
Zhenhua Yu, Ao Li, Minghui Wang
CloneCNA: detecting subclonal somatic copy number alterations in heterogeneous tumor samples from whole-exome sequencing data. BMC Bioinform. 17 (2016)
Ya Zhang, Ao Li, Chen Peng, Minghui Wang
Improve Glioblastoma Multiforme Prognosis Prediction by Using Feature Selection and Multiple Kernel Learning. IEEE ACM Trans. Comput. Biol. Bioinform. 13 (5) (2016)
Mengqu Ge, Ao Li, Minghui Wang
A Bipartite Network-based Method for Prediction of Long Non-coding RNA-protein Interactions. Genom. Proteom. Bioinform. 14 (1) (2016)
Yuanwei Zhang, Qiguang Zang, Bo Xu, Wei Zheng, Rongjun Ban, Huan Zhang, Yifan Yang, QiaoMei Hao, Furhan Iqbal, Ao Li, Qinghua Shi
IsomiR Bank: a research resource for tracking IsomiRs. Bioinform. 32 (13) (2016)
Ao Li, Qiguang Zang, Dongdong Sun, Minghui Wang
A text feature-based approach for literature mining of lncRNA-protein interactions. Neurocomputing 206 (2016)
Chen Peng, Ao Li, Huanqing Feng, Minghui Wang
Heterogeneous network-based propagation algorithm for discovering bladder cancer-related genes. ICNC-FSKD (2016)
Yi Shen, Fan Gao, Minghui Wang, Ao Li
RPdb: a database of experimentally verified cellular reprogramming records. Bioinform. 31 (19) (2015)
Hong Xia, Yuanning Liu, Minghui Wang, Ao Li
Identification of Genomic Aberrations in Cancer Subclones from Heterogeneous Tumor Samples. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (3) (2015)
Yuanwei Zhang, Zhenhua Yu, Rongjun Ban, Huan Zhang, Furhan Iqbal, Aiwu Zhao, Ao Li, Qinghua Shi
DeAnnCNV: a tool for online detection and annotation of copy number variations from whole-exome sequencing data. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Zijun Qin, Minghui Wang, Yujie Jiang, Xiaoyi Xu, Huanqing Feng, Ao Li
A novel method for predicting protein phosphorylation via site-modification network profiles. BMEI (2015)
Zhenhua Yu, Yuanning Liu, Yi Shen, Minghui Wang, Ao Li
CLImAT: accurate detection of copy number alteration and loss of heterozygosity in impure and aneuploid tumor samples using whole-genome sequencing data. Bioinform. 30 (18) (2014)
Xiaoyi Xu, Ao Li, Minghui Wang
Prediction of human disease-specific phosphorylation sites with combined feature selection approach and support vector machine. BIBM (2014)
Liang Zou, Mang Wang, Yi Shen, Jie Liao, Ao Li, Minghui Wang
PKIS: computational identification of protein Kinases for experimentally discovered protein Phosphorylation sites. BMC Bioinform. 14 (2013)
Yang Song, Yu Gu, Peisen Wang, Yuanning Liu, Ao Li
A Kinect based gesture recognition algorithm using GMM and HMM. BMEI (2013)
Wenwen Fan, Liang Zou, Ao Li, Minghui Wang
Prediction of protein kinase-specific phosphorylation sites using Random forest algorithm. BMEI (2012)
Zhenhua Yu, Minghui Wang, Ao Li
PISV: A novel algorithm for peptide identification using spectrum vector. BMEI (2012)
Yuanning Liu, Zequn Zhang, Ao Li, Minghui Wang
View independent human posture identification using Kinect. BMEI (2012)
Xiaoyi Xu, Ya Zhang, Liang Zou, Minghui Wang, Ao Li
A gene signature for breast cancer prognosis using support vector machine. BMEI (2012)
Chen Peng, Liang Zou, Minghui Wang, Ao Li
Construction and analysis of human phosphorylation network. BMEI (2012)
Yu Xue, Ao Li, Lirong Wang, Huanqing Feng, Xuebiao Yao
PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory. BMC Bioinform. 7 (2006)
Xian Wang, Ao Li, Zhaohui Jiang, Huanqing Feng
Missing value estimation for DNA microarray gene expression data by Support Vector Regression imputation and orthogonal coding scheme. BMC Bioinform. 7 (2006)
Dan Xie, Ao Li, Minghui Wang, Zhewen Fan, Huanqing Feng
LOCSVMPSI: a web server for subcellular localization of eukaryotic proteins using SVM and profile of PSI-BLAST. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)