Ralf Herwig

Publication Activity (10 Years)

Years Active: 2000-2022
Publications (10 Years): 3

Top Topics

Molecular Interactions

High Throughput Sequencing

Statistical Analysis

Top Venues

Nucleic Acids Res.

Database J. Biol. Databases Curation

Publications

Atanas Kamburov, Ralf Herwig
ConsensusPathDB 2022: molecular interactions update as a resource for network biology. Nucleic Acids Res. 50 (D1) (2022)
Nhan Nguyen, Matthias Lienhard, Ralf Herwig, Jos Kleinjans, Danyel Jennen
A bioinformatics workflow to detect genes with DNA methylation alterations: a case study of analyzing MeDIP-seq data in cardiac microtissue exposed to epirubicin. ICBBB (2022)
Christopher Hardt, Moritz Emanuel Beber, Axel Rasche, Atanas Kamburov, Dennie G. A. J. Hebels, Jos C. S. Kleinjans, Ralf Herwig
ToxDB: pathway-level interpretation of drug-treatment data. Database J. Biol. Databases Curation 2016 (2016)
Diana M. Hendrickx, Hugo J. W. L. Aerts, Florian Caiment, Dominic Clark, Timothy M. D. Ebbels, Chris T. A. Evelo, Hans Gmuender, Dennie G. A. J. Hebels, Ralf Herwig, Jürgen Hescheler, Danyel G. J. Jennen, Marlon J. A. Jetten, Stathis Kanterakis, Hector C. Keun, Vera Matser, John P. Overington, Ekaterina Pilicheva, Ugis Sarkans, Marcelo P. Segura-Lepe, Isaia Sotiriadou, Timo Wittenberger, Clemens Wittwehr, Antonella Zanzi, Jos C. S. Kleinjans
diXa: a data infrastructure for chemical safety assessment. Bioinform. 31 (9) (2015)
Matthias Lienhard, Christina Grimm, Markus Morkel, Ralf Herwig, Lukas Chavez
MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments. Bioinform. 30 (2) (2014)
Atanas Kamburov, Ulrich Stelzl, Hans Lehrach, Ralf Herwig
The ConsensusPathDB interaction database: 2013 update. Nucleic Acids Res. 41 (Database-Issue) (2013)
Atanas Kamburov, Arndt Grossmann, Ralf Herwig, Ulrich Stelzl
Cluster-based assessment of protein-protein interaction confidence. BMC Bioinform. 13 (2012)
Atanas Kamburov, Ulrich Stelzl, Ralf Herwig
IntScore: a web tool for confidence scoring of biological interactions. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Felix Dreher, Thomas Kreitler, Christopher Hardt, Atanas Kamburov, Reha Yildirimman, Karl Schellander, Hans Lehrach, Bodo M. H. Lange, Ralf Herwig
DIPSBC - data integration platform for systems biology collaborations. BMC Bioinform. 13 (2012)
Rachel Cavill, Atanas Kamburov, James K. Ellis, Toby J. Athersuch, Marcus S. C. Blagrove, Ralf Herwig, Timothy M. D. Ebbels, Hector C. Keun
Consensus-Phenotype Integration of Transcriptomic and Metabolomic Data Implies a Role for Metabolism in the Chemosensitivity of Tumour Cells. PLoS Comput. Biol. 7 (3) (2011)
Atanas Kamburov, Konstantin Pentchev, Hanna Galicka, Christoph K. Wierling, Hans Lehrach, Ralf Herwig
ConsensusPathDB: toward a more complete picture of cell biology. Nucleic Acids Res. 39 (Database-Issue) (2011)
Atanas Kamburov, Rachel Cavill, Timothy M. D. Ebbels, Ralf Herwig, Hector C. Keun
Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA. Bioinform. 27 (20) (2011)
Konstantin Pentchev, Keiichiro Ono, Ralf Herwig, Trey Ideker, Atanas Kamburov
Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape. Bioinform. 26 (21) (2010)
Axel Rasche, Ralf Herwig
ARH: predicting splice variants from genome-wide data with modified entropy. Bioinform. 26 (1) (2010)
Hendrik Hache, Hans Lehrach, Ralf Herwig
Reverse Engineering of Gene Regulatory Networks: A Comparative Study. EURASIP J. Bioinform. Syst. Biol. 2009 (2009)
Atanas Kamburov, Christoph K. Wierling, Hans Lehrach, Ralf Herwig
ConsensusPathDB - a database for integrating human functional interaction networks. Nucleic Acids Res. 37 (Database-Issue) (2009)
Hendrik Hache, Christoph K. Wierling, Hans Lehrach, Ralf Herwig
GeNGe: systematic generation of gene regulatory networks. Bioinform. 25 (9) (2009)
Axel Rasche, Ralf Herwig
T2DM-GeneMiner a web resource for meta-analysis and marker identification for type 2 diabetes mellitus. BMC Bioinform. 8 (S-8) (2007)
Witold E. Wolski, Maciej Lalowski, Peter Martus, Ralf Herwig, Patrick Giavalisco, Johan Gobom, Albert Sickmann, Hans Lehrach, Knut Reinert
Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process. BMC Bioinform. 6 (2005)
Christoph Dieterich, Ralf Herwig, Martin Vingron
Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites. ECCB (2003)
Christoph K. Wierling, Matthias Steinfath, Thorsten Elge, Steffen Schulze-Kremer, Pia Aanstad, Matthew Clark, Hans Lehrach, Ralf Herwig
Simulation of DNA array hybridization experiments and evaluation of critical parameters during subsequent image and data analysis. BMC Bioinform. 3 (2002)
Steffen Hennig, Ralf Herwig, Matthew Clark, Pia Aanstad, A. Musa, John O'Brien, C. Bull, Uwe Radelof, Georgia Panopoulou, Albert J. Poustka, Hans Lehrach
A data-analysis pipeline for large-scale gene expression analysis. RECOMB (2000)
Ralf Herwig, Armin Otto Schmitt, Matthias Steinfath, John O'Brien, Henrik Seidel, Sebastian Meier-Ewert, Hans Lehrach, Uwe Radelof
Information theoretical probe selection for hybridisation experiments. Bioinform. 16 (10) (2000)