Fabien Jourdan

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 10

Top Topics

Metabolic Networks

Identify Potential

Scientific Literature

Hierarchical Structures

Top Venues

PLoS Comput. Biol.

Nucleic Acids Res.

Publications

Juliette Cooke, Maxime Delmas, Cecilia Wieder, Pablo Rodríguez-Mier, Clément Frainay, Florence Vinson, Timothy M. D. Ebbels, Nathalie Poupin, Fabien Jourdan
Genome scale metabolic network modelling for metabolic profile predictions. PLoS Comput. Biol. 20 (2) (2024)
Louison Fresnais, Olivier Périn, Anne Riu, Romain Grall, Alban Ott, Bernard Fromenty, Jean-Clément Gallardo, Maximilian Stingl, Clément Frainay, Fabien Jourdan, Nathalie Poupin
A strategy to detect metabolic changes induced by exposure to chemicals from large sets of condition-specific metabolic models computed with enumeration techniques. BMC Bioinform. 24 (1) (2023)
Maxime Delmas, Olivier Filangi, Nils Paulhe, Florence Vinson, Christophe Duperier, William Garrier, Paul-Emeric Saunier, Yoann Pitarch, Fabien Jourdan, Franck Giacomoni, Clément Frainay
FORUM: building a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases. Bioinform. 37 (21) (2021)
Pablo Rodríguez-Mier, Nathalie Poupin, Carlo de Blasio, Laurent Le Cam, Fabien Jourdan
DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks. PLoS Comput. Biol. 17 (2) (2021)
Cecilia Wieder, Clément Frainay, Nathalie Poupin, Pablo Rodríguez-Mier, Florence Vinson, Juliette Cooke, Rachel P. J. Lai, Jacob G. Bundy, Fabien Jourdan, Timothy Ebbels
Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis. PLoS Comput. Biol. 17 (9) (2021)
Clément Frainay, Sandrine Aros, Maxime Chazalviel, Thomas Garcia, Florence Vinson, Nicolas Weiss, Benoit Colsch, Frédéric Sedel, Dominique Thabut, Christophe Junot, Fabien Jourdan
MetaboRank: network-based recommendation system to interpret and enrich metabolomics results. Bioinform. 35 (2) (2019)
Maxime Chazalviel, Clément Frainay, Nathalie Poupin, Florence Vinson, Benjamin Merlet, Yoann Gloaguen, Ludovic Cottret, Fabien Jourdan
MetExploreViz: web component for interactive metabolic network visualization. Bioinform. 34 (2) (2018)
Ludovic Cottret, Clément Frainay, Maxime Chazalviel, Floréal Cabanettes, Yoann Gloaguen, Etienne Camenen, Benjamin Merlet, Stéphanie Heux, Jean-Charles Portais, Nathalie Poupin, Florence Vinson, Fabien Jourdan
MetExplore: collaborative edition and exploration of metabolic networks. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Merlijn N. van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez Del Angel, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Jose L. Izquierdo-García, Rafael C. Jimenez, Fabien Jourdan, Namrata Kale, Maria I. Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Nicholas K. Moschonas, Steffen Neumann, Claire O'Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata P. Satagopam, Daniel Schober, Ruth Shimmo, Rachel A. Spicer, Ola Spjuth, Etienne A. Thévenot, Mark R. Viant, Ralf J. M. Weber, Egon L. Willighagen, Gianluigi Zanetti, Christoph Steinbeck
The future of metabolomics in ELIXIR. F1000Research 6 (2017)
Clément Frainay, Fabien Jourdan
Computational methods to identify metabolic sub-networks based on metabolomic profiles. Briefings Bioinform. 18 (1) (2017)
Sanu Shameer, Flora J. Logan-Klumpler, Florence Vinson, Ludovic Cottret, Benjamin Merlet, Fiona Achcar, Michael Boshart, Matthew Berriman, Rainer Breitling, Frédéric Bringaud, Peter Bütikofer, Amy M. Cattanach, Bridget Bannerman-Chukualim, Darren J. Creek, Kathryn Crouch, Harry P. de Koning, Hubert Denise, Charles Ebikeme, Alan H. Fairlamb, Michael A. J. Ferguson, Michael L. Ginger, Christiane Hertz-Fowler, Eduard J. Kerkhoven, Pascal Mäser, Paul A. M. Michels, Archana Nayak, David W. Nes, Derek P. Nolan, Christian Olsen, Fatima Silva-Franco, Terry K. Smith, Martin C. Taylor, Aloysius G. M. Tielens, Michael D. Urbaniak, Jaap J. van Hellemond, Isabel M. Vincent, Shane R. Wilkinson, Susan Wyllie, Fred R. Opperdoes, Michael P. Barrett, Fabien Jourdan
. Nucleic Acids Res. 43 (Database-Issue) (2015)
Ricardo R. da Silva, Fabien Jourdan, Diego M. Salvanha, Fabien Létisse, Emilien L. Jamin, Simone Guidetti-Gonzalez, Carlos A. Labate, Ricardo Z. N. Vêncio
package for Bayesian probabilistic annotation of LC-MS-based metabolomics. Bioinform. 30 (9) (2014)
Frédéric Gilbert, Paolo Simonetto, Faraz Zaidi, Fabien Jourdan, Romain Bourqui
Communities and Hierarchical Structures in Dynamic Social Networks: Analysis and Visualization. CoRR (2014)
Paulo Vieira Milreu, Cecilia Coimbra Klein, Ludovic Cottret, Vicente Acuña, Etienne Birmelé, Michele Borassi, Christophe Junot, Alberto Marchetti-Spaccamela, Andrea Marino, Leen Stougie, Fabien Jourdan, Pierluigi Crescenzi, Vincent Lacroix, Marie-France Sagot
Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure. Bioinform. 30 (1) (2014)
Vicente Acuña, Etienne Birmelé, Ludovic Cottret, Pierluigi Crescenzi, Fabien Jourdan, Vincent Lacroix, Alberto Marchetti-Spaccamela, Andrea Marino, Paulo Vieira Milreu, Marie-France Sagot, Leen Stougie
Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets. Theor. Comput. Sci. 457 (2012)
Jonathan Dubois, Ludovic Cottret, Amine Ghozlane, David Auber, Frédéric Bringaud, Patricia Thébault, Fabien Jourdan, Romain Bourqui
Systrip: A Visual Environment for the Investigation of Time-series Data in the Context of Metabolic Networks. IV (2012)
Amine Ghozlane, Frédéric Bringaud, Hayssam Soueidan, Isabelle Dutour, Fabien Jourdan, Patricia Thébault
Glycolysis Based on a Multiobjective-Criteria Bioinformatic Approach. Adv. Bioinformatics 2012 (2012)
Frédéric Gilbert, Paolo Simonetto, Faraz Zaidi, Fabien Jourdan, Romain Bourqui
Communities and hierarchical structures in dynamic social networks: analysis and visualization. Soc. Netw. Anal. Min. 1 (2) (2011)
Romain Bourqui, Helen C. Purchase, Fabien Jourdan
Domain specific vs Generic Network Visualization: an Evaluation with Metabolic Networks. AUIC (2011)
Ludovic Cottret, David Wildridge, Florence Vinson, Michael P. Barrett, Hubert Charles, Marie-France Sagot, Fabien Jourdan
MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Romain Bourqui, Frédéric Gilbert, Paolo Simonetto, Faraz Zaidi, Umang Sharan, Fabien Jourdan
Detecting Structural Changes and Command Hierarchies in Dynamic Social Networks. ASONAM (2009)
Romain Bourqui, Paolo Simonetto, Fabien Jourdan
A Stable Decomposition Algorithm for Dynamic Social Network Analysis. EGC (best of volume) (2009)
Romain Bourqui, Paolo Simonetto, Fabien Jourdan
Un algorithme stable de décomposition pour l'analyse des réseaux sociaux dynamiques. EGC (2009)
Romain Bourqui, Fabien Jourdan
Revealing Subnetwork Roles using Contextual Visualization: Comparison of Metabolic Networks. IV (2008)
Fabien Jourdan, Rainer Breitling, Michael P. Barrett, David R. Gilbert
MetaNetter: inference and visualization of high-resolution metabolomic networks. Bioinform. 24 (1) (2008)
Romain Bourqui, Ludovic Cottret, Vincent Lacroix, David Auber, Patrick Mary, Marie-France Sagot, Fabien Jourdan
Metabolic network visualization eliminating node redundance and preserving metabolic pathways. BMC Syst. Biol. 1 (2007)
Fabien Jourdan, Alain Paris, Pierre-Yves Koenig, Guy Melançon
Multiscale Scatterplot Matrix for Visual and Interactive Exploration of Metabonomic Data. VIEW (2006)
Romain Bourqui, David Auber, Vincent Lacroix, Fabien Jourdan
Metabolic network visualization using constraint planar graph drawing algorithm. IV (2006)
Fabien Jourdan, Guy Melançon, Christophe Douy, Alexandre Gasne
Une approche MDS hybride pour l'exploration visuelle interactive. IHM (2005)
David Auber, Fabien Jourdan
Interactive Refinement of Multi-scale Network Clusterings. IV (2005)
Fabien Jourdan, Guy Melançon
Multiscale hybrid MDS. IV (2004)
Yves Chiricota, Fabien Jourdan, Guy Melançon
Metric-Based Network Exploration and Multiscale Scatterplot. INFOVIS (2004)
Yves Chiricota, Fabien Jourdan, Guy Melançon
Software Components Capture Using Graph Clustering. IWPC (2003)
David Auber, Yves Chiricota, Fabien Jourdan, Guy Melançon
Multiscale Visualization of Small World Networks. INFOVIS (2003)
Fabien Jourdan, Guy Melançon
Tool for metabolic and regulatory pathways visual analysis. Visualization and Data Analysis (2003)