Ludovic Cottret

Publication Activity (10 Years)

Years Active: 2007-2021
Publications (10 Years): 3

Top Topics

Visual Environment

Directed Acyclic Graph

Metabolic Networks

Top Venues

Nucleic Acids Res.

Publications

Kerian Thuillier, Caroline Baroukh, Alexander Bockmayr, Ludovic Cottret, Loïc Paulevé, Anne Siegel
Learning Boolean Controls in Regulated Metabolic Networks: A Case-Study. CMSB (2021)
Maxime Chazalviel, Clément Frainay, Nathalie Poupin, Florence Vinson, Benjamin Merlet, Yoann Gloaguen, Ludovic Cottret, Fabien Jourdan
MetExploreViz: web component for interactive metabolic network visualization. Bioinform. 34 (2) (2018)
Ludovic Cottret, Clément Frainay, Maxime Chazalviel, Floréal Cabanettes, Yoann Gloaguen, Etienne Camenen, Benjamin Merlet, Stéphanie Heux, Jean-Charles Portais, Nathalie Poupin, Florence Vinson, Fabien Jourdan
MetExplore: collaborative edition and exploration of metabolic networks. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Sanu Shameer, Flora J. Logan-Klumpler, Florence Vinson, Ludovic Cottret, Benjamin Merlet, Fiona Achcar, Michael Boshart, Matthew Berriman, Rainer Breitling, Frédéric Bringaud, Peter Bütikofer, Amy M. Cattanach, Bridget Bannerman-Chukualim, Darren J. Creek, Kathryn Crouch, Harry P. de Koning, Hubert Denise, Charles Ebikeme, Alan H. Fairlamb, Michael A. J. Ferguson, Michael L. Ginger, Christiane Hertz-Fowler, Eduard J. Kerkhoven, Pascal Mäser, Paul A. M. Michels, Archana Nayak, David W. Nes, Derek P. Nolan, Christian Olsen, Fatima Silva-Franco, Terry K. Smith, Martin C. Taylor, Aloysius G. M. Tielens, Michael D. Urbaniak, Jaap J. van Hellemond, Isabel M. Vincent, Shane R. Wilkinson, Susan Wyllie, Fred R. Opperdoes, Michael P. Barrett, Fabien Jourdan
. Nucleic Acids Res. 43 (Database-Issue) (2015)
Lucas Marmiesse, Rémi Peyraud, Ludovic Cottret
FlexFlux: combining metabolic flux and regulatory network analyses. BMC Syst. Biol. 9 (2015)
Mehdi Khafif, Ludovic Cottret, Claudine Balagué, Sylvain Raffaele
Identification and phylogenetic analyses of VASt, an uncharacterized protein domain associated with lipid-binding domains in Eukaryotes. BMC Bioinform. 15 (2014)
Paulo Vieira Milreu, Cecilia Coimbra Klein, Ludovic Cottret, Vicente Acuña, Etienne Birmelé, Michele Borassi, Christophe Junot, Alberto Marchetti-Spaccamela, Andrea Marino, Leen Stougie, Fabien Jourdan, Pierluigi Crescenzi, Vincent Lacroix, Marie-France Sagot
Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure. Bioinform. 30 (1) (2014)
Vicente Acuña, Etienne Birmelé, Ludovic Cottret, Pierluigi Crescenzi, Fabien Jourdan, Vincent Lacroix, Alberto Marchetti-Spaccamela, Andrea Marino, Paulo Vieira Milreu, Marie-France Sagot, Leen Stougie
Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets. Theor. Comput. Sci. 457 (2012)
Vicente Acuña, Paulo Vieira Milreu, Ludovic Cottret, Alberto Marchetti-Spaccamela, Leen Stougie, Marie-France Sagot
Algorithms and complexity of enumerating minimal precursor sets in genome-wide metabolic networks. Bioinform. 28 (19) (2012)
Jonathan Dubois, Ludovic Cottret, Amine Ghozlane, David Auber, Frédéric Bringaud, Patricia Thébault, Fabien Jourdan, Romain Bourqui
Systrip: A Visual Environment for the Investigation of Time-series Data in the Context of Metabolic Networks. IV (2012)
Augusto F. Vellozo, Amélie S. Véron, Patrice Baa-Puyoulet, Jaime Huerta-Cepas, Ludovic Cottret, Gérard Febvay, Federica Calevro, Yvan Rahbé, Angela E. Douglas, Toni Gabaldón, Marie-France Sagot, Hubert Charles, Stefano Colella
CycADS: an annotation database system to ease the development and update of BioCyc databases. Database J. Biol. Databases Curation 2011 (2011)
Ludovic Cottret, David Wildridge, Florence Vinson, Michael P. Barrett, Hubert Charles, Marie-France Sagot, Fabien Jourdan
MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Ludovic Cottret, Paulo Vieira Milreu, Vicente Acuña, Alberto Marchetti-Spaccamela, Leen Stougie, Hubert Charles, Marie-France Sagot
. PLoS Comput. Biol. 6 (9) (2010)
Franck Picard, Vincent Miele, Jean-Jacques Daudin, Ludovic Cottret, Stéphane Robin
Deciphering the connectivity structure of biological networks using MixNet. BMC Bioinform. 10 (S-6) (2009)
Vincent Lacroix, Ludovic Cottret, Patricia Thébault, Marie-France Sagot
An Introduction to Metabolic Networks and Their Structural Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. 5 (4) (2008)
Ludovic Cottret, Paulo Vieira Milreu, Vicente Acuña, Alberto Marchetti-Spaccamela, Fábio Viduani Martinez, Marie-France Sagot, Leen Stougie
Enumerating Precursor Sets of Target Metabolites in a Metabolic Network. WABI (2008)
Romain Bourqui, Ludovic Cottret, Vincent Lacroix, David Auber, Patrick Mary, Marie-France Sagot, Fabien Jourdan
Metabolic network visualization eliminating node redundance and preserving metabolic pathways. BMC Syst. Biol. 1 (2007)