Thomas Steinke

Publication Activity (10 Years)

Years Active: 1999-2023
Publications (10 Years): 15

Top Topics

Parallel And Distributed Computing

Metadata Management

Top Venues

IPDPS Workshops

Concurr. Comput. Pract. Exp.

Euro-Par Workshops

Publications

Fatemeh Chegini, Thomas Steinke, Martin Weiser
Efficient adaptivity for simulating cardiac electrophysiology with spectral deferred correction methods. CoRR (2023)
Samer Alhaddad, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen Grynko, Frank Hannig, Tobias Kenter, Franz-Josef Pfreundt, Christian Plessl, Merlind Schotte, Thomas Steinke, Jürgen Teich, Martin Weiser, Florian Wende
The HighPerMeshes framework for numerical algorithms on unstructured grids. Concurr. Comput. Pract. Exp. 34 (14) (2022)
Marius Knaust, Enrico Seiler, Knut Reinert, Thomas Steinke
Co-Design for Energy Efficient and Fast Genomic Search: Interleaved Bloom Filter on FPGA. FPGA (2022)
Steffen Christgau, Marius Knaust, Thomas Steinke
A First Step towards Support for MPI Partitioned Communication on SYCL-programmed FPGAs. H2RC@SC (2022)
Tobias Baumann, Matthias Noack, Thomas Steinke
Performance Evaluation and Improvements of the PoCL Open-Source OpenCL Implementation on Intel CPUs. IWOCL (2021)
Samer Alhaddad, Jens Förstner, Stefan Groth, Daniel Grünewald, Yevgen Grynko, Frank Hannig, Tobias Kenter, Franz-Josef Pfreundt, Christian Plessl, Merlind Schotte, Thomas Steinke, Jürgen Teich, Martin Weiser, Florian Wende
HighPerMeshes - A Domain-Specific Language for Numerical Algorithms on Unstructured Grids. Euro-Par Workshops (2020)
Steffen Christgau, Thomas Steinke
Leveraging a Heterogeneous Memory System for a Legacy Fortran Code: The Interplay of Storage Class Memory, DRAM and OS. MCHPC@SC (2020)
Steffen Christgau, Thomas Steinke
Porting a Legacy CUDA Stencil Code to oneAPI. IPDPS Workshops (2020)
Marius Knaust, Florian Mayer, Thomas Steinke
OpenMP to FPGA Offloading Prototype Using OpenCL SDK. IPDPS Workshops (2019)
Matthias Noack, Erich Focht, Thomas Steinke
Heterogeneous Active Messages for Offloading on the NEC SX-Aurora TSUBASA. IPDPS Workshops (2019)
Thomas Steinke, Estela Suarez, Taisuke Boku, Nalini Kumar, David E. Martin
Using FPGAs to Accelerate HPC and Data Analytics on Intel-Based Systems. ISC Workshops (2019)
Helge Knoop, Tobias Gronemeier, Matthias Sühring, Peter Steinbach, Matthias Noack, Florian Wende, Thomas Steinke, Christoph Knigge, Siegfried Raasch, Klaus Ketelsen
Porting the MPI-parallelised LES model PALM to multi-GPU systems and many integrated core processors - an experience report. Int. J. Comput. Sci. Eng. 17 (3) (2018)
Matthias Noack, Alexander Reinefeld, Tobias Kramer, Thomas Steinke
DM-HEOM: A Portable and Scalable Solver-Framework for the Hierarchical Equations of Motion. IPDPS Workshops (2018)
Matthias Noack, Florian Wende, Georg Zitzlsberger, Michael Klemm, Thomas Steinke
KART - A Runtime Compilation Library for Improving HPC Application Performance. ISC Workshops (2017)
Florian Wende, Matthias Noack, Thomas Steinke, Michael Klemm, Chris J. Newburn, Georg Zitzlsberger
Portable SIMD Performance with OpenMP* 4.x Compiler Directives. Euro-Par (2016)
Sebastian Dreßler, Thomas Steinke
An automated approach for estimating the memory footprint of nonlinear data objects. Concurr. Comput. Pract. Exp. 27 (6) (2015)
Richard Grunzke, Sebastian Breuers, Sandra Gesing, Sonja Herres-Pawlis, Martin Kruse, Dirk Blunk, Luis de la Garza, Lars Packschies, Patrick Schäfer, Charlotta Schärfe, Tobias Schlemmer, Thomas Steinke, Bernd Schuller, Ralph Müller-Pfefferkorn, René Jäkel, Wolfgang E. Nagel, Malcolm P. Atkinson, Jens Krüger
Standards-based metadata management for molecular simulations. Concurr. Comput. Pract. Exp. 26 (10) (2014)
Florian Wende, Thomas Steinke, Frank Cordes
Concurrent Kernel Execution on Xeon Phi within Parallel Heterogeneous Workloads. Euro-Par (2014)
Matthias Noack, Florian Wende, Thomas Steinke, Frank Cordes
A Unified Programming Model for Intra- and Inter-Node Offloading on Xeon Phi Clusters. SC (2014)
Sebastian Dreßler, Thomas Steinke
Energy consumption of CUDA kernels with varying thread topology. Comput. Sci. Res. Dev. 29 (2) (2014)
Lars Packschies, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Martin Kruse, Ulrich Lang, Ralph Müller-Pfefferkorn, Patrick Schäfer, Tobias Schlemmer, Thomas Steinke, Klaus-Dieter Warzecha, Andreas Zink
The MoSGrid - e-science gateway: molecular simulations in a distributed computing environment. J. Cheminformatics 5 (S-1) (2013)
Florian Wende, Thomas Steinke
Swendsen-Wang multi-cluster algorithm for the 2D/3D Ising model on Xeon Phi and GPU. SC (2013)
Sebastian Dreßler, Thomas Steinke
An Automated Approach for Estimating the Memory Footprint of Non-linear Data Objects. Euro-Par Workshops (2013)
Simon McIntosh-Smith, Charles Gillan, Nico Sanna, Stan Scott, Thomas Steinke
Special issue of the Journal of Parallel and Distributed Computing (JDPC) on novel architectures for high-performance computing. J. Parallel Distributed Comput. 73 (11) (2013)
Charles J. Gillan, Thomas Steinke, J. Bock, S. Borchert, Ivor T. A. Spence, N. Stanley Scott
Comparing the implementation of two-dimensional numerical quadrature on GPU, FPGA and ClearSpeed systems to study electron scattering by atoms. Concurr. Comput. Pract. Exp. 24 (1) (2012)
Sandra Gesing, Richard Grunzke, Jens Krüger, Georg Birkenheuer, Martin Wewior, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Sonja Herres-Pawlis, Sebastian Breuers, Ákos Balaskó, Miklos Kozlovszky, Anna Szikszay Fabri, Lars Packschies, Péter Kacsuk, Dirk Blunk, Thomas Steinke, André Brinkmann, Gregor Fels, Ralph Müller-Pfefferkorn, René Jäkel, Oliver Kohlbacher
A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics. J. Grid Comput. 10 (4) (2012)
Khaled Benkrid, Esam El-Araby, Miaoqing Huang, Kentaro Sano, Thomas Steinke
High-Performance Reconfigurable Computing. Int. J. Reconfigurable Comput. 2012 (2012)
Frank Dickmann, Jürgen Falkner, Wilfried Gunia, Jochen Hampe, Michael Hausmann, Alexander Herrmann, Nick Kepper, Tobias A. Knoch, Svenja Lauterbach, Jörg Lippert, Kathrin Peter, Eberhard Schmitt, Ulrich Schwardmann, Juri Solodenko, Dietmar Sommerfeld, Thomas Steinke, Anette Weisbecker, Ulrich Sax
Solutions for biomedical grid computing - Case studies from the D-Grid project Services@MediGRID. J. Comput. Sci. 3 (5) (2012)
Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke, Klaus-Dieter Warzecha, Martin Wewior
MoSGrid: efficient data management and a standardized data exchange format for molecular simulations in a grid environment. J. Cheminformatics 4 (S-1) (2012)
Jens Krüger, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sandra Gesing, Richard Grunzke, Oliver Kohlbacher, Nico Kruber, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Sonja Herres-Pawlis, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus-Dieter Warzecha, Martin Wewior
Molecular simulation grid. J. Cheminformatics 3 (S-1) (2011)
Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Nico Kruber, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus-Dieter Warzecha, Martin Wewior
MoSGrid - a molecular simulation grid as a new tool in computational chemistry, biology and material science. J. Cheminformatics 3 (S-1) (2011)
Sandra Gesing, Richard Grunzke, Ákos Balaskó, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sonja Herres-Pawlis, Péter Kacsuk, Miklos Kozlovszky, Jens Krüger, Lars Packschies, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Thomas Steinke, Anna Szikszay Fabri, Martin Wewior, Ralph Müller-Pfefferkorn, Oliver Kohlbacher
Granular Security for a Science Gateway in Structural Bioinformatics. IWSG-Life (2011)
Patrick May, Annika Kreuchwig, Thomas Steinke, Ina Koch
PTGL: a database for secondary structure-based protein topologies. Nucleic Acids Res. 38 (Database-Issue) (2010)
Charles J. Gillan, Thomas Steinke, J. Bock, S. Borchert, Ivor T. A. Spence, N. Stanley Scott
Programming Challenges for the Implementation of Numerical Quadrature in Atomic Physics on FPGA and GPU Accelerators. CCGRID (2010)
Dagmar Krefting, Julian Bart, Kamen Beronov, Olga Dzhimova, Jürgen Falkner, Michael Hartung, Andreas Hoheisel, Tobias A. Knoch, Thomas Lingner, Yassene Mohammed, Kathrin Peter, Erhard Rahm, Ulrich Sax, Dietmar Sommerfeld, Thomas Steinke, Thomas Tolxdorff, Michal Vossberg, Fred Viezens, Anette Weisbecker
MediGRID: Towards a user friendly secured grid infrastructure. Future Gener. Comput. Syst. 25 (3) (2009)
Frank Dickmann, Mathias Kaspar, Benjamin Löhnhardt, Nick Kepper, Fred Viezens, Frank Hertel, Michael Lesnussa, Yassene Mohammed, Andreas Thiel, Thomas Steinke, Johannes Bernarding, Dagmar Krefting, Tobias A. Knoch, Ulrich Sax
Visualization in Health Grid Environments: A Novel Service and Business Approach. GECON (2009)
Raphael André Bauer, Kristian Rother, Peter Moor, Knut Reinert, Thomas Steinke, Janusz M. Bujnicki, Robert Preissner
Fast Structural Alignment of Biomolecules Using a Hash Table, N-Grams and String Descriptors. Algorithms 2 (2) (2009)
Patrick May, Gunnar W. Klau, Markus Bauer, Thomas Steinke
Accelerated microRNA-Precursor Detection Using the Smith-Waterman Algorithm on FPGAs. GCCB (2006)
Björn Kolbeck, Patrick May, Tobias Schmidt-Goenner, Thomas Steinke, Ernst-Walter Knapp
Connectivity independent protein-structure alignment: a hierarchical approach. BMC Bioinform. 7 (2006)
Patrick May, Hans-Christian Ehrlich, Thomas Steinke
ZIB Structure Prediction Pipeline: Composing a Complex Biological Workflow Through Web Services. Euro-Par (2006)
Silke Trißl, Kristian Rother, Heiko Müller, Thomas Steinke, Ina Koch, Robert Preissner, Cornelius Frömmel, Ulf Leser
Columba: an integrated database of proteins, structures, and annotations. BMC Bioinform. 6 (2005)
Kristian Rother, Heiko Müller, Silke Trißl, Ina Koch, Thomas Steinke, Robert Preissner, Cornelius Frömmel, Ulf Leser
Columba: Multidimensional Data Integration of Protein Annotations. DILS (2004)
Michael Meyer, Thomas Steinke, Maria Brandl, Jürgen Sühnel
Density functional study of guanine and uracil quartets and of guanine quartet/metal ion complexes. J. Comput. Chem. 22 (1) (2001)
Michael Meyer, Thomas Steinke, Jürgen Sühnel, Maria Brandl
Density functional study of guanine quartet structures. German Conference on Bioinformatics (1999)