Malcolm P. Atkinson

ORCID

Publication Activity (10 Years)

Years Active: 1972-2019
Publications (10 Years): 25

Top Venues

CoRR

eScience

Future Gener. Comput. Syst.

e-Science

University of Cambridge, UK (PHD)

Education History

University of Cambridge, UK

PHD

Publications

Malcolm P. Atkinson, Rosa Filgueira, Iraklis A. Klampanos, Antonis Koukourikos, Amrey Krause, Federica Magnoni, Christian Pagé, Andreas Rietbrock, Alessandro Spinuso
Comprehensible Control for Researchers and Developers Facing Data Challenges. eScience (2019)
Iraklis A. Klampanos, Federica Magnoni, Emanuele Casarotti, Christian Pagé, Mike Lindner, Andreas Ikonomopoulos, Vangelis Karkaletsis, Athanasios Davvetas, André Gemünd, Malcolm P. Atkinson, Antonios Koukourikos, Rosa Filgueira, Amrey Krause, Alessandro Spinuso, Angelos Charalambidis
DARE: A Reflective Platform Designed to Enable Agile Data-Driven Research on the Cloud. eScience (2019)
Rafael Ferreira da Silva, Rosa Filgueira, Ewa Deelman, Erola Pairo-Castineira, Ian Michael Overton, Malcolm P. Atkinson
Using simple PID-inspired controllers for online resilient resource management of distributed scientific workflows. Future Gener. Comput. Syst. 95 (2019)
Alessandro Spinuso, Malcolm P. Atkinson, Federica Magnoni
Active Provenance for Data-Intensive Workflows: Engaging Users and Developers. eScience (2019)
Luca Trani, Malcolm P. Atkinson, Daniele Bailo, Rossana Paciello, Rosa Filgueira
Establishing Core Concepts for Information-Powered Collaborations. Future Gener. Comput. Syst. 89 (2018)
Luca Trani, Mathijs R. Koymans, Malcolm P. Atkinson, Reinoud Sleeman, Rosa Filgueira
Corrigendum to "WFCatalog: A catalogue for seismological waveform data" [Comput. Geosci. 106 (2017) 101-108]. Comput. Geosci. 119 (2018)
Ole Weidner, Malcolm P. Atkinson, Adam Barker, Rosa Filgueira
Rethinking High Performance Computing Platforms: Challenges, Opportunities and Recommendations. CoRR (2017)
Chee Sun Liew, Malcolm P. Atkinson, Michelle Galea, Tan Fong Ang, Paul Martin, Jano I. van Hemert
Scientific Workflows: Moving Across Paradigms. ACM Comput. Surv. 49 (4) (2017)
Ole Weidner, Adam Barker, Malcolm P. Atkinson
Seastar: A Comprehensive Framework for Telemetry Data in HPC Environments. ROSS@HPDC (2017)
Luca Trani, Mathijs R. Koymans, Malcolm P. Atkinson, Reinoud Sleeman, Rosa Filgueira
WFCatalog: A catalogue for seismological waveform data. Comput. Geosci. 106 (2017)
Malcolm P. Atkinson, Sandra Gesing, Johan Montagnat, Ian J. Taylor
Scientific workflows: Past, present and future. Future Gener. Comput. Syst. 75 (2017)
Rosa Filgueira, Amrey Krause, Malcolm P. Atkinson, Iraklis A. Klampanos, Alexander Moreno
dispel4py. Int. J. High Perform. Comput. Appl. 31 (4) (2017)
Ole Weidner, Malcolm P. Atkinson, Adam Barker
Towards a Comprehensive Framework for Telemetry Data in HPC Environments. CoRR (2017)
Rosa Filgueira, Rafael Ferreira da Silva, Amrey Krause, Ewa Deelman, Malcolm P. Atkinson
Asterism: Pegasus and Dispel4py Hybrid Workflows for Data-Intensive Science. DataCloud@SC (2016)
Robert L. Grossman, Matthew Greenway, Allison P. Heath, Ray Powell, Rafael D. Suarez, Walt Wells, Kevin P. White, Malcolm P. Atkinson, Iraklis A. Klampanos, Heidi L. Alvarez, Christine Harvey, Joe Mambretti
The Design of a Community Science Cloud: The Open Science Data Cloud Perspective. CoRR (2016)
Rafael Ferreira da Silva, Rosa Filgueira, Ewa Deelman, Erola Pairo-Castineira, Ian Michael Overton, Malcolm P. Atkinson
Using Simple PID Controllers to Prevent and Mitigate Faults in Scientific Workflows. WORKS@SC (2016)
Ole Weidner, Malcolm P. Atkinson, Adam Barker, Rosa Filgueira Vicente
Rethinking High Performance Computing Platforms: Challenges, Opportunities and Recommendations. DIDC@HPDC (2016)
Amrey Krause, Rosa Filgueira, Malcolm P. Atkinson
dispel4py: a Python framework for data-intensive eScience. PyHPC@SC (2015)
Malcolm P. Atkinson, Michele Carpenè, Emanuele Casarotti, Steffen Claus, Rosa Filgueira, Anton Frank, Michelle Galea, Tom Garth, André Gemünd, Heiner Igel, Iraklis A. Klampanos, Amrey Krause, Lion Krischer, Siew Hoon Leong, Federica Magnoni, Jonas Matser, Alberto Michelini, Andreas Rietbrock, Horst Schwichtenberg, Alessandro Spinuso, Jean-Pierre Vilotte
VERCE delivers a productive e-Science environment for seismology research. CoRR (2015)
Malcolm P. Atkinson, Michele Carpenè, Emanuele Casarotti, Steffen Claus, Rosa Filgueira, Anton Frank, Michelle Galea, Tom Garth, André Gemünd, Heiner Igel, Iraklis A. Klampanos, Amrey Krause, Lion Krischer, Siew Hoon Leong, Federica Magnoni, Jonas Matser, Alberto Michelini, Andreas Rietbrock, Horst Schwichtenberg, Alessandro Spinuso, Jean-Pierre Vilotte
VERCE Delivers a Productive E-science Environment for Seismology Research. e-Science (2015)
Gary A. McGilvary, Malcolm P. Atkinson, Sandra Gesing, Alvaro Aguilera, Richard Grunzke, Eva Sciacca
Enhanced Usability of Managing Workflows in an Industrial Data Gateway. e-Science (2015)
Gary A. McGilvary, Adam Barker, Malcolm P. Atkinson
Ad Hoc Cloud Computing. CLOUD (2015)
Gary A. McGilvary, Malcolm P. Atkinson, Sandra Gesing, Alvaro Aguilera, Richard Grunzke, Eva Sciacca
Enhanced Usability of Managing Workflows in an Industrial Data Gateway. CoRR (2015)
Gary Andrew McGilvary, Adam Barker, Malcolm P. Atkinson
Ad hoc Cloud Computing. CoRR (2015)
Rosa Filgueira, Amrey Krause, Malcolm P. Atkinson, Iraklis A. Klampanos, Alessandro Spinuso, Susana Sánchez-Expósito
dispel4py: An Agile Framework for Data-Intensive eScience. e-Science (2015)
Rosa Filgueira, Iraklis A. Klampanos, Amrey Krause, Mário David, Alexander Moreno, Malcolm P. Atkinson
dispel4py: a Python framework for data-intensive scientific computing. DISCS@SC (2014)
Rosa Filgueira, Iraklis A. Klampanos, Yusuke Tanimura, Malcolm P. Atkinson
FAST: flexible automated synchronization transfer. DICT@HPDC (2014)
Richard Grunzke, Sebastian Breuers, Sandra Gesing, Sonja Herres-Pawlis, Martin Kruse, Dirk Blunk, Luis de la Garza, Lars Packschies, Patrick Schäfer, Charlotta Schärfe, Tobias Schlemmer, Thomas Steinke, Bernd Schuller, Ralph Müller-Pfefferkorn, René Jäkel, Wolfgang E. Nagel, Malcolm P. Atkinson, Jens Krüger
Standards-based metadata management for molecular simulations. Concurr. Comput. Pract. Exp. 26 (10) (2014)
Rosa Filgueira, Malcolm P. Atkinson, Andrew Bell, Ian Main, Steve Boon, Christopher Kilburn, Philip Meredith
eScience Gateway Stimulating Collaboration in Rock Physics and Volcanology. eScience (2014)
Rosa Filgueira, Malcolm P. Atkinson, Yusuke Tanimura, Isao Kojima
Applying Selectively Parallel I/O Compression to Parallel Storage Systems. Euro-Par (2014)
Sandra Gesing, Malcolm P. Atkinson, Rosa Filgueira, Ian J. Taylor, Andrew Jones, Vlado Stankovski, Chee Sun Liew, Alessandro Spinuso, Gábor Terstyánszky, Péter Kacsuk
Workflows in a dashboard: a new generation of usability. WORKS@SC (2014)
Fan Zhu, David Rodriguez Gonzalez, Trevor Carpenter, Malcolm P. Atkinson, Joanna M. Wardlaw
Lesion Area Detection Using Source Image Correlation Coefficient for CT Perfusion Imaging. IEEE J. Biomed. Health Informatics 17 (5) (2013)
Yusuke Tanimura, Rosa Filgueira, Isao Kojima, Malcolm P. Atkinson
MPI collective I/O based on advanced reservations to obtain performance guarantees from shared storage systems. CLUSTER (2013)
Gary A. McGilvary, Adam Barker, Ashley D. Lloyd, Malcolm P. Atkinson
V-BOINC: The Virtualization of BOINC. CCGRID (2013)
Gary A. McGilvary, Adam Barker, Ashley D. Lloyd, Malcolm P. Atkinson
V-BOINC: The Virtualization of BOINC. CoRR (2013)
Gary A. McGilvary, Josep Rius, Iñigo Goiri, Francesc Solsona, Adam Barker, Malcolm P. Atkinson
C2MS: Dynamic Monitoring and Management of Cloud Infrastructures. CloudCom (1) (2013)
Alessandro Spinuso, James Cheney, Malcolm P. Atkinson
Provenance for seismological processing pipelines in a distributed streaming workflow. EDBT/ICDT Workshops (2013)
Gary A. McGilvary, Josep Rius, Iñigo Goiri, Francesc Solsona, Adam Barker, Malcolm P. Atkinson
C2MS: Dynamic Monitoring and Management of Cloud Infrastructures. CoRR (2013)
Michele Carpenè, Iraklis A. Klampanos, Siew Hoon Leong, Emanuele Casarotti, Peter Danecek, Graziella Ferini, André Gemünd, Amrey Krause, Lion Krischer, Federica Magnoni, Marek Simon, Alessandro Spinuso, Luca Trani, Malcolm P. Atkinson, Giovanni Erbacci, Anton Frank, Heiner Igel, Andreas Rietbrock, Horst Schwichtenberg, Jean-Pierre Vilotte
Towards Addressing CPU-Intensive Seismological Applications in Europe. ISC (2013)
Yin Chen, Paul Martin, Barbara Magagna, Herbert Schentz, Zhiming Zhao, Alex R. Hardisty, Alun D. Preece, Malcolm P. Atkinson, Robert Huber, Yannick Legré
A Common Reference Model for Environmental Science Research Infrastructures. EnviroInfo (2013)
Sandra Gesing, Malcolm P. Atkinson, Iraklis A. Klampanos, Michelle Galea, Michael R. Berthold, Roberto Barbera, Diego Scardaci, Gábor Terstyánszky, Tamás Kiss, Péter Kacsuk
The demand for consistent web-based workflow editors. WORKS@SC (2013)
Malcolm P. Atkinson, Chee Sun Liew, Michelle Galea, Paul Martin, Amrey Krause, Adrian Mouat, Óscar Corcho, David Snelling
Data-intensive architecture for scientific knowledge discovery. Distributed Parallel Databases 30 (5-6) (2012)
Rosa Filgueira, Malcolm P. Atkinson, Alberto Nuñez, Javier Fernández
An Adaptive, Scalable, and Portable Technique for Speeding Up MPI-Based Applications. Euro-Par (2012)
Robert L. Grossman, Matthew Greenway, Allison P. Heath, Ray Powell, Rafael D. Suarez, Walt Wells, Kevin P. White, Malcolm P. Atkinson, Iraklis A. Klampanos, Heidi L. Alvarez, Christine Harvey, Joe Mambretti
The Design of a Community Science Cloud: The Open Science Data Cloud Perspective. SC Companion (2012)
Fan Zhu, David Rodriguez Gonzalez, Trevor Carpenter, Malcolm P. Atkinson, Joanna M. Wardlaw
Parallel perfusion imaging processing using GPGPU. Comput. Methods Programs Biomed. 108 (3) (2012)
Yusuke Tanimura, Rosa Filgueira, Isao Kojima, Malcolm P. Atkinson
Poster: Reservation-Based I/O Performance Guarantee for MPI-IO Applications Using Shared Storage Systems. SC Companion (2012)
Yusuke Tanimura, Rosa Filgueira, Isao Kojima, Malcolm P. Atkinson
Abstract: Reservation-Based I/O Performance Guarantee for MPI-IO Applications Using Shared Storage Systems. SC Companion (2012)
Liangxiu Han, Chee Sun Liew, Jano I. van Hemert, Malcolm P. Atkinson
A generic parallel processing model for facilitating data mining and integration. Parallel Comput. 37 (3) (2011)
Fan Zhu, David Rodriguez Gonzalez, Trevor Carpenter, Malcolm P. Atkinson, Joanna M. Wardlaw
A Parallel Deconvolution Algorithm in Perfusion Imaging. HISB (2011)
Chee Sun Liew, Malcolm P. Atkinson, Jano I. van Hemert, Liangxiu Han
Towards optimising distributed data streaming graphs using parallel streams. HPDC (2010)
Gagarine Yaikhom, Chee Sun Liew, Liangxiu Han, Jano I. van Hemert, Malcolm P. Atkinson, Amy Krause
Federated Enactment of Workflow Patterns. Euro-Par (1) (2010)
Adam Barker, Jano I. van Hemert, Richard A. Baldock, Malcolm P. Atkinson
An e-Infrastructure for Collaborative Research in Human Embryo Development CoRR (2009)
Adam Barker, Jano I. van Hemert, Richard A. Baldock, Malcolm P. Atkinson
An E-infrastructure to Support Collaborative Embryo Research. CCGRID (2009)
Liangxiu Han, Jano I. van Hemert, Richard A. Baldock, Malcolm P. Atkinson
Automating Gene Expression Annotation for Mouse Embryo. ADMA (2009)
Malcolm P. Atkinson
Guest Editorial: Research Data: It's What You Do With Them. Int. J. Digit. Curation 4 (1) (2009)
Boon Low, Kathryn Cassidy, David Fergusson, Malcolm P. Atkinson, Elizabeth Vander Meer, Mags McGeever
Distributed Computing Education, Part 5: Coming to Terms with Intellectual Property Rights. IEEE Distributed Syst. Online 9 (12) (2008)
David Fergusson, Roberto Barbera, Emidio Giorgio, Marco Fargetta, Gergely Sipos, Diego Romano, Malcolm P. Atkinson, Elizabeth Vander Meer
Distributed Computing Education, Part 4: Training Infrastructure. IEEE Distributed Syst. Online 9 (10) (2008)
Alistair Grant, Mario Antonioletti, Alastair C. Hume, Amy Krause, Bartosz Dobrzelecki, Michael J. Jackson, Mark Parsons, Malcolm P. Atkinson, Elias Theocharopoulos
OGSA-DAI: Middleware for Data Integration: Selected Applications. eScience (2008)
David Fergusson, Elizabeth Vander Meer, Malcolm P. Atkinson, Diego Romano
Distributed Computing Education, Part 1: A Special Case?. IEEE Distributed Syst. Online 9 (6) (2008)
David Fergusson, Petar Jandric, Richard P. Hopkins, Elizabeth Vander Meer, Malcolm P. Atkinson
Distributed Computing Education, Part 3: The Winter School Online Experience. IEEE Distributed Syst. Online 9 (9) (2008)
David Fergusson, Richard P. Hopkins, Diego Romano, Elizabeth Vander Meer, Malcolm P. Atkinson
Distributed Computing Education, Part 2: International Summer Schools. IEEE Distributed Syst. Online 9 (7) (2008)
David W. Walker, Malcolm P. Atkinson, Ian Sommerville
Special Issue: Selected Papers from the 2004 U.K. e-Science All Hands Meeting (AHM 2004). Concurr. Comput. Pract. Exp. 19 (2) (2007)
Mario Antonioletti, Malcolm P. Atkinson, Neil P. Chue Hong, Bartosz Dobrzelecki, Alastair C. Hume, Mike Jackson, Konstantinos Karasavvas, Amy Krause, Jennifer M. Schopf, Tom Sugden, Elias Theocharopoulos
Grid Enabling Your Data Resources with OGSA-DAI. PARA (2006)
Rüdiger Berlich, Markus Hardt, Marcel Kunze, Malcolm P. Atkinson, David Fergusson
EGEE: building a pan-European grid training organisation. ACSW (2006)
Mario Antonioletti, Malcolm P. Atkinson, Robert M. Baxter, Andrew Borley, Neil P. Chue Hong, Brian Collins, Neil Hardman, Alastair C. Hume, Alan Knox, Mike Jackson, Amrey Krause, Simon Laws, James Magowan, Norman W. Paton, Dave Pearson, Tom Sugden, Paul Watson, Martin Westhead
The design and implementation of Grid database services in OGSA-DAI. Concurr. Pract. Exp. 17 (2-4) (2005)
Malcolm P. Atkinson, David De Roure, Alistair N. Dunlop, Geoffrey C. Fox, Peter Henderson, Anthony J. G. Hey, Norman W. Paton, Steven Newhouse, Savas Parastatidis, Anne E. Trefethen, Paul Watson, Jim Webber
Web Service Grids: an evolutionary approach. Concurr. Pract. Exp. 17 (2-4) (2005)
Neil P. Chue Hong, Mario Antonioletti, Konstantinos Karasavvas, Malcolm P. Atkinson
Accessing Data in Grids Using OGSA-DAI. Knowledge and Data Management in GRIDs (2005)
Ewa Deelman, Gurmeet Singh, Malcolm P. Atkinson, Ann L. Chervenak, Neil P. Chue Hong, Carl Kesselman, Sonal Patil, Laura Pearlman, Mei-Hui Su
Grid-Based Metadata Services. SSDBM (2004)
Konstantinos Karasavvas, Mario Antonioletti, Malcolm P. Atkinson, Neil P. Chue Hong, Tom Sugden, Alastair C. Hume, Mike Jackson, Amrey Krause, Charaka Palansuriya
Introduction to OGSA-DAI Services. SAG (2004)
James Huw Evans, Malcolm P. Atkinson, Margaret I. Brown, Julie Cargill, Murray Crease, Steve Draper, Philip D. Gray, Richard Thomas
The pervasiveness of evolution in GRUMPS software. Softw. Pract. Exp. 33 (2) (2003)
Malcolm P. Atkinson
Databases and the Grid: Who Challenges Whom? BNCOD (2003)
Ela Hunt, Malcolm P. Atkinson, Robert W. Irving
Database indexing for large DNA and protein sequence collections. VLDB J. 11 (3) (2002)
Tony Printezis, Malcolm P. Atkinson
An efficient object promotion algorithm for persistent object systems. Softw. Pract. Exp. 31 (10) (2001)
Ela Hunt, Malcolm P. Atkinson, Robert W. Irving
A Database Index to Large Biological Sequences. VLDB (2001)
Malcolm P. Atkinson
Guest editorial. VLDB J. 9 (3) (2000)
Malcolm P. Atkinson
Persistence and Java - A Balancing Act. Objects and Databases (2000)
Malcolm P. Atkinson, Misha Dmitriev, Craig Hamilton, Tony Printezis
Platform. POS (2000)
Misha Dmitriev, Malcolm P. Atkinson
Evolutionary Data Conversion in the PJama Persistent Language. ECOOP Workshops (1999)
Tony Printezis, Malcolm P. Atkinson, Mick J. Jordan
Defining and Handling Transient Fields in PJama. DBPL (1999)
Malcolm P. Atkinson, Mick J. Jordan
Issues Raised by Three Years of Developing PJama: An Orthogonally Persistent Platform for Java. ICDT (1999)
Mick J. Jordan, Malcolm P. Atkinson
Orthogonal Persistence for Java? - A Mid-term Report. POS/PJW (1998)
Malcolm P. Atkinson, Mick J. Jordan
Providing Orthogonal Persistence for Java (Extended Abstract). ECOOP (1998)
Ray Welland, Malcolm P. Atkinson
A zoned architecture for large-scale evolution. ISAW@FSE (1998)
Ronald Morrison, Mick J. Jordan, Malcolm P. Atkinson
Preface & Foreword POS/PJW (1998)
Stein Grimstad, Dag I. K. Sjøberg, Malcolm P. Atkinson, Ray Welland
Evaluating Usability Aspects of PJama Based on Source Code Measurements. POS/PJW (1998)
Darryn Lavery, Gilbert Cockton, Malcolm P. Atkinson
Comparison of evaluation methods using structured usability problem reports. Behav. Inf. Technol. 16 (4-5) (1997)
Dag I. K. Sjøberg, Ray Welland, Malcolm P. Atkinson
Software Constraints for Large Application Systems. Comput. J. 40 (10) (1997)
Susan Spence, Malcolm P. Atkinson
A Scalable Model of Distribution Promoting Autonomy of and Cooperation between PJava Object Stores. HICSS (1) (1997)
Dag I. K. Sjøberg, Ray Welland, Malcolm P. Atkinson, Paul Philbrow, Cathy Waite
Exploiting Persistence in Build Management. Softw. Pract. Exp. 27 (4) (1997)
Dag I. K. Sjøberg, Ray Welland, Malcolm P. Atkinson, Paul Philbrow, Cathy Waite, S. Macneill
The Persistent Workshop - a Programming Environment for Napier88. Nord. J. Comput. 4 (1) (1997)
Miguel Mira da Silva, Malcolm P. Atkinson, Andrew P. Black
Semantics for Parameter Passing in a Type-complete Persistent RPS. ICDCS (1996)
Malcolm P. Atkinson, Laurent Daynès, Mick J. Jordan, Tony Printezis, Susan Spence
An Orthogonally Persistent Java. SIGMOD Rec. 25 (4) (1996)
Malcolm P. Atkinson, Mick J. Jordan, Laurent Daynès, Susan Spence
Design Issues for Persistent Java: A Type-Safe, Object-Oriented, Orthogonally Persistent System. POS (1996)
Miguel Mira da Silva, Malcolm P. Atkinson
Higher-order Distributed Computation over Autonomous Persistent Stores. POS (1996)
Malcolm P. Atkinson, Ronald Morrison
Orthogonally Persistent Object Systems VLDB J. 4 (3) (1995)
Ronald Morrison, A. England, Richard C. H. Connor, Malcolm P. Atkinson, Svetlana Barneva, Fausto Rabitti, Pavel Zezula
Using continued fractions for efficient subclass checking. OOPS Messenger 6 (2) (1995)
Malcolm P. Atkinson
Object Store Engineering 1. POS (1994)
Dag I. K. Sjøberg, Quintin I. Cutts, Ray Welland, Malcolm P. Atkinson
Analysing Persistent Language Applications. POS (1994)
Dag I. K. Sjøberg, Malcolm P. Atkinson, João Lopes, Philip W. Trinder
Building an Integrated Persistent Application. DBPL (1993)
Richard C. H. Connor, Malcolm P. Atkinson, Sonia Berman, Quintin I. Cutts, Graham N. C. Kirby, Ronald Morrison
The Joy of Sets. DBPL (1993)

Malcolm P. Atkinson.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Malcolm P. Atkinson