Andre Dekker

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 52

Top Topics

Vertically Partitioned

Personal Health

Top Venues

Artif. Intell. Medicine

Publications

Esther R. C. Janssen, Ilona M. Punt, Johan van Soest, Yvonne F. Heerkens, Hillegonda A. Stallinga, Huib ten Napel, Lodewijk W. van Rhijn, Barend Mons, Andre Dekker, Paul C. Willems, Nico L. U. van Meeteren
Operationalizing and digitizing person-centered daily functioning: a case for functionomics. BMC Medical Informatics Decis. Mak. 24 (1) (2024)
Ananya Choudhury, Esther R. C. Janssen, Bart C. Bongers, Nico L. U. van Meeteren, Andre Dekker, Johan van Soest
Colorectal cancer health and care quality indicators in a federated setting using the Personal Health Train. BMC Medical Informatics Decis. Mak. 24 (1) (2024)
Zhihe Zhao, Siyao Du, Zeyan Xu, Zhi Yin, Xiaomei Huang, Xin Huang, Chinting Wong, Yanting Liang, Jing Shen, Jianlin Wu, Jinrong Qu, Lina Zhang, Yanfen Cui, Ying Wang, Leonard Wee, Andre Dekker, Chu Han, Zaiyi Liu, Zhenwei Shi, Changhong Liang
SwinHR: Hemodynamic-powered hierarchical vision transformer for breast tumor segmentation. Comput. Biol. Medicine 169 (2024)
Pedro Mateus, Justine E. F. Moonen, Magdalena Beran, Eva Jaarsma, Sophie M. van der Landen, Joost Heuvelink, Mahlet A. Birhanu, Alexander G. J. Harms, Esther Bron, Frank J. Wolters, Davy Cats, Hailiang Mei, Julie Oomens, Willemijn Jansen, Miranda T. Schram, Andre Dekker, Iñigo Bermejo
Data harmonization and federated learning for multi-cohort dementia research using the OMOP common data model: A Netherlands consortium of dementia cohorts case study. J. Biomed. Informatics 155 (2024)
Florian Van Daalen, Lianne Ippel, Andre Dekker, Iñigo Bermejo
Federated Bayesian Network Ensembles. CoRR (2024)
Florian Van Daalen, Lianne Ippel, Andre Dekker, Iñigo Bermejo
Federated Bayesian Network Ensembles. FMEC (2023)
Junhua Chen, Chong Zhang, Leonard Wee, Andre Dekker, Iñigo Bermejo
Are all shortcuts in encoder-decoder networks beneficial for CT denoising? Comput. methods Biomech. Biomed. Eng. Imaging Vis. 11 (1) (2023)
Ashish Kumar Jha, Sneha Mithun, Umeshkumar B. Sherkhane, Vinay Jaiswar, Biche Osong, Nilendu Purandare, Sadhana Kannan, Kumar Prabhash, Sudeep Gupta, Ben G. L. Vanneste, Venkatesh Rangarajan, Andre Dekker, Leonard Wee
Systematic review and meta-analysis of prediction models used in cervical cancer. Artif. Intell. Medicine 139 (2023)
Florian Van Daalen, Lianne Ippel, Andre Dekker, Iñigo Bermejo
Privacy Preserving $n$n-Party Scalar Product Protocol. IEEE Trans. Parallel Distributed Syst. 34 (4) (2023)
Suraj Pai, Ibrahim Hadzic, Chinmay Rao, Ivan Zhovannik, Andre Dekker, Alberto Traverso, Stylianos Asteriadis, Enrique Hortal
Frequency-Domain-Based Structure Losses for CycleGAN-Based Cone-Beam Computed Tomography Translation. Sensors 23 (3) (2023)
Varsha Gouthamchand, Ananya Choudhury, Frank Hoebers, Frederik Wesseling, Mattea Welch, Sejin Kim, Benjamin Haibe-Kains, Joanna Kazmierska, Andre Dekker, Johan van Soest, Leonard Wee
Privacy-Preserving Dashboard for F.A.I.R Head and Neck Cancer data supporting multi-centered collaborations. SWAT4HCLS (2023)
Ashish Kumar Jha, Umeshkumar B. Sherkhane, Sneha Mithun, Vinay Jaiswar, Nilendu Purandare, Kumar Prabhash, Leonard Wee, Venkatesh Rangarajan, Andre Dekker
External Validation of Robust Radiomic Signature to Predict 2-Year Overall Survival in Non-Small-Cell Lung Cancer. J. Digit. Imaging 36 (6) (2023)
Ye Zhang, Zhixiang Wang, Zhen Zhang, Junzhuo Liu, Ying Feng, Leonard Wee, Andre Dekker, Qiaosong Chen, Alberto Traverso
GAN-based one dimensional medical data augmentation. Soft Comput. 27 (15) (2023)
Sneha Mithun, Ashish Kumar Jha, Umeshkumar B. Sherkhane, Vinay Jaiswar, Nilendu Purandare, Andre Dekker, Sander Puts, Iñigo Bermejo, Venkatesh Rangarajan, Catharina M. L. Zegers, Leonard Wee
Clinical Concept-Based Radiology Reports Classification Pipeline for Lung Carcinoma. J. Digit. Imaging 36 (3) (2023)
Parnian Afshar, Arash Mohammadi, Konstantinos N. Plataniotis, Keyvan Farahani, Justin S. Kirby, Anastasia Oikonomou, Amir Asif, Leonard Wee, Andre Dekker, Xin Wu, Mohammad Ariful Haque, Shahruk Hossain, Md. Kamrul Hasan, Uday Kamal, Winston H. Hsu, Jhih-Yuan Lin, M. Sohel Rahman, Nabil Ibtehaz, Sh. M. Amir Foisol, Kin-Man Lam, Zhong Guang, Runze Zhang, Sumohana S. Channappayya, Shashank Gupta, Chander Dev
Lung-Originated Tumor Segmentation from Computed Tomography Scan (LOTUS) Benchmark. CoRR (2022)
Junzhuo Liu, Zhixiang Wang, Ye Zhang, Alberto Traverso, Andre Dekker, Zhen Zhang, Qiaosong Chen
CycleGAN Clinical Image Augmentation Based on Mask Self-Attention Mechanism. IEEE Access 10 (2022)
Florian Van Daalen, Lianne Ippel, Andre Dekker, Iñigo Bermejo
VertiBayes: Learning Bayesian network parameters from vertically partitioned data with missing values. CoRR (2022)
Peter M. A. van Ooijen, Erfan Darzidehkalani, Andre Dekker
AI Technical Considerations: Data Storage, Cloud usage and AI Pipeline. CoRR (2022)
Hajar Hasannejadasl, Cheryl Roumen, Yolba Smit, Andre Dekker, Rianne Fijten
Health literacy in e-oncology care: challenges and strategies. CoRR (2022)
Junhua Chen, Iñigo Bermejo, Andre Dekker, Leonard Wee
Generative Models Improve Radiomics Performance in Different Tasks and Different Datasets: An Experimental Study. CoRR (2021)
Florian Van Daalen, Iñigo Bermejo, Lianne Ippel, Andre Dekker
Privacy preserving n-party scalar product protocol. CoRR (2021)
Chang Sun, Lianne Ippel, Andre Dekker, Michel Dumontier, Johan van Soest
A systematic review on privacy-preserving distributed data mining. Data Sci. 4 (2) (2021)
Leanne L. G. C. Ackermans, Leroy Volmer, Leonard Wee, Ralph Brecheisen, Patricia Sánchez-González, Alexander P. Seiffert, Enrique J. Gómez, Andre Dekker, Jan A. Ten Bosch, Steven M. W. Olde Damink, Taco J. Blokhuis
Deep Learning Automated Segmentation for Muscle and Adipose Tissue from Abdominal Computed Tomography in Polytrauma Patients. Sensors 21 (6) (2021)
Hajar Hasannejadasl, Cheryl Roumen, Henk van der Poel, Ben G. L. Vanneste, Joep G. van Roermund, Katja Aben, Petros Kalendralis, Biche Osong, Lambertus Kiemeney, Inge M. van Oort, Renée Verwey, Laura Hochstenbach, Esther Bloemen-van Gurp, Andre Dekker, Rianne Fijten
Predicting erectile dysfunction after treatment for localized prostate cancer. CoRR (2021)
Matthijs Sloep, Petros Kalendralis, Ananya Choudhury, Lerau Seyben, Jasper Snel, Nibin Moni George, Martijn Veening, Johannes A. Langendijk, Andre Dekker, Johan van Soest, Rianne Fijten
A Knowledge graph representation of baseline characteristics for the Dutch proton therapy research registry. CoRR (2021)
Junhua Chen, Chong Zhang, Alberto Traverso, Ivan Zhovannik, Andre Dekker, Leonard Wee, Iñigo Bermejo
Generative Models Improve Radiomics Reproducibility in Low Dose CTs: A Simulation Study. CoRR (2021)
Junhua Chen, Haiyan Zeng, Chong Zhang, Zhenwei Shi, Andre Dekker, Leonard Wee, Iñigo Bermejo
Lung Cancer Diagnosis Using Deep Attention Based on Multiple Instance Learning and Radiomics. CoRR (2021)
Anshu Ankolekar, Britt van der Heijden, Andre Dekker, Cheryl Roumen, Dirk De Ruysscher, Bart Reymen, Ruud Houben, Peter Fick, Sander Puts, Joeri Veugen, Adriana Berlanga, Cary Oberije, Rianne Fijten
Implications of Clinicians' Attitudes Towards Clinical Decision Support Systems. MIE (2020)
Ravindra Patil, Leonard Wee, Andre Dekker
Auto Segmentation of Lung in Non-small Cell Lung Cancer Using Deep Convolution Neural Network. ICACDS (2020)
Chinmay Rao, Suraj Pai, Ibrahim Hadzic, Ivan Zhovannik, Dennis Bontempi, Andre Dekker, Jonas Teuwen, Alberto Traverso
Oropharyngeal Tumour Segmentation Using Ensemble 3D PET-CT Fusion Networks for the HECKTOR Challenge. HECKTOR@MICCAI (2020)
Siva Teja Kakileti, Himanshu J. Madhu, Geetha Manjunath, Leonard Wee, Andre Dekker, Sudhakar Sampangi
Personalized risk prediction for breast cancer pre-screening using artificial intelligence and thermal radiomics. Artif. Intell. Medicine 105 (2020)
Oya Beyan, Ananya Choudhury, Johan van Soest, Oliver Kohlbacher, Lukas Zimmermann, Holger Stenzhorn, Md. Rezaul Karim, Michel Dumontier, Stefan Decker, Luiz Olavo Bonino da Silva Santos, Andre Dekker
Distributed Analytics on Sensitive Medical Data: The Personal Health Train. Data Intell. 2 (1-2) (2020)
Ananya Choudhury, Johan van Soest, Stuti Nayak, Andre Dekker
Personal Health Train on FHIR: A Privacy Preserving Federated Approach for Analyzing FAIR Data in Healthcare. MIND (1) (2020)
Alberto Traverso, Ali Hosni-Abdalaty, Mohammad Hasan, Tony Tadic, Tirth Patel, Meredith Giuliani, John Kim, Jolie Ringash, John Cho, Scott V. Bratman, Andrew Bayley, John Waldron, Brian O'Sullivan, Jonathan C. Irish, Douglas Chepeha, John De Almeida, David Goldstein, David A. Jaffray, Leonard Wee, Andre Dekker, Andrew Hope
Non-invasive prediction of lymph node risk in oral cavity cancer patients using a combination of supervised and unsupervised machine learning algorithms. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging (2020)
Anshu Ankolekar, Ben G. L. Vanneste, Esther Bloemen-van Gurp, Joep G. van Roermund, Adriana Berlanga, Cheryl Roumen, Evert J. van Limbergen, Ludy Lutgens, Tom Marcelissen, Philippe Lambin, Andre Dekker, Rianne Fijten
Nine Recommendations for Decision Aid Implementation from the Clinician Perspective. CoRR (2020)
Chang Sun, Lianne Ippel, Johan van Soest, Birgit Wouters, Alexander Malic, Onaopepo Adekunle, Bob van den Berg, Ole Mussmann, Annemarie Koster, Carla van der Kallen, Claudia van Oppen, David Townend, Andre Dekker, Michel Dumontier
A Privacy-Preserving Infrastructure for Analyzing Personal Health Data in a Vertically Partitioned Scenario. MedInfo (2019)
Maria Jacobs, Liesbeth J. Boersma, Rachelle Swart, Rob Mannens, Bart Reymen, Fred Körver, Frits van Merode, Andre Dekker
Electronic Health Record implementation in a large academic radiotherapy department: Temporarily disruptions but long-term benefits. Int. J. Medical Informatics 129 (2019)
Chang Sun, Vincent Emonet, Johan van Soest, Annemarie Koster, Andre Dekker, Michel Dumontier
Transformation and Integration of Heterogeneous Health Data in a Privacy-preserving Distributed Learning Infrastructure. SWAT4HCLS (2019)
Bas Schipaanboord, Djamal Boukerroui, Devis Peressutti, Johan van Soest, Tim Lustberg, Andre Dekker, Wouter van Elmpt, Mark J. Gooding
An Evaluation of Atlas Selection Methods for Atlas-Based Automatic Segmentation in Radiotherapy Treatment Planning. IEEE Trans. Medical Imaging 38 (11) (2019)
Johan van Soest, Ananya Choudhury, Nikhil Gaikwad, Matthijs Sloep, Michel Dumontier, Andre Dekker
Annotation of Existing Databases using Semantic Web Technologies: Making Data more FAIR. SWAT4HCLS (2019)
Anshu Ankolekar, Ben G. L. Vanneste, Esther Bloemen-van Gurp, Joep G. van Roermund, Evert J. van Limbergen, Kees van de Beek, Tom Marcelissen, Victor Zambon, Matthias Oelke, Andre Dekker, Cheryl Roumen, Philippe Lambin, Adriana Berlanga, Rianne Fijten
Development and validation of a patient decision aid for prostate Cancer therapy: from paternalistic towards participative shared decision making. BMC Medical Informatics Decis. Mak. 19 (1) (2019)
Zhenwei Shi, Chong Zhang, Inge Compter, Maikel Verduin, Ann Hoeben, Danielle Eekers, Andre Dekker, Leonard Wee
A Feature-Pooling and Signature-Pooling Method for Feature Selection for Quantitative Image Analysis: Application to a Radiomics Model for Survival in Glioma. RNO-AI@MICCAI (2019)
Bas Schipaanboord, Djamal Boukerroui, Devis Peressutti, Johan van Soest, Tim Lustberg, Timor Kadir, Andre Dekker, Wouter van Elmpt, Mark J. Gooding
Can Atlas-Based Auto-Segmentation Ever Be Perfect? Insights From Extreme Value Theory. IEEE Trans. Medical Imaging 38 (1) (2019)
Roberto Gatta, Mauro Vallati, Nicola Dinapoli, Carlotta Masciocchi, Jacopo Lenkowicz, Davide Cusumano, Calogero Casà, Alessandra Farchione, Andrea Damiani, Johan van Soest, Andre Dekker, Vincenzo Valentini
Towards a modular decision support system for radiomics: A case study on rectal cancer. Artif. Intell. Medicine 96 (2019)
Alberto Traverso, Zhenwei Shi, Leonard Wee, Andre Dekker
FAIR Quantitative Imaging in Oncology: how Semantic Web and Ontologies will support Reproducible Science. SWAT4HCLS (2019)
Alberto Traverso, Martin Vallières, Johan van Soest, Leonard Wee, Olivier Morin, Andre Dekker
Publishing Linked and FAIR-compliant Radiomics Data in Radiation Oncology via Ontologies and Semantic Web Techniques. SWAT4HCLS (2019)
Tim Lustberg, Johan van Soest, Peter Fick, Rianne Fijten, Tim Hendriks, Sander Puts, Andre Dekker
Radiation Oncology Terminology Linker: A Step Towards a Linked Data Knowledge Base. MIE (2018)
Chang Sun, Lianne Ippel, Birgit Wouters, Johan van Soest, Alexander Malic, Onaopepo Adekunle, Bob van den Berg, Marco Puts, Ole Mussmann, Annemarie Koster, Carla van der Kallen, David Townend, Andre Dekker, Michel Dumontier
Analyzing Partitioned FAIR Health Data Responsibly. CoRR (2018)
Johan van Soest, Chang Sun, Ole Mussmann, Marco Puts, Bob van den Berg, Alexander Malic, Claudia van Oppen, David Townend, Andre Dekker, Michel Dumontier
Using the Personal Health Train for Automated and Privacy-Preserving Analytics on Vertically Partitioned Data. MIE (2018)
Martine de Vos, Berend Weel, Adriënne M. Mendrik, Andre Dekker, Johan van Soest
Fast and Easy Mapping of Relational Data to RDF for Rapid Learning Health Care. eScience (2018)
Mohamed S. Barakat, Matthew Field, Aditya Ghose, David Stirling, Lois Holloway, Shalini K. Vinod, Andre Dekker, David Thwaites
The effect of imputing missing clinical attribute values on training lung cancer survival prediction model performance. Health Inf. Sci. Syst. 5 (1) (2017)
Qing Hu, Zhisheng Huang, Annette ten Teije, Frank van Harmelen, M. Scott Marshall, Andre Dekker
A Topic-centric Approach to Detecting New Evidences for Evidence-based Medical Guidelines. HEALTHINF (2016)
Stefan Klein, Erwin Vast, Johan van Soest, Andre Dekker, Marcel Koek, Wiro J. Niessen
XNAT imaging platform for BioMedBridges and CTMM TraIT. J. Clin. Bioinform. 5 (S-1) (2015)
M. Scott Marshall, Johan van Soest, R. Dresens, J. Paulissen, Philippe Lambin, Andre Dekker
Information extraction of eligibility criteria for trial enrolment support. MIE (2015)
Andrea Damiani, Mauro Vallati, Roberto Gatta, Nicola Dinapoli, Arthur Jochems, Timo Deist, Johan van Soest, Andre Dekker, Vincenzo Valentini
Distributed Learning to Protect Privacy in Multi-centric Clinical Studies. AIME (2015)
Zhisheng Huang, Frank van Harmelen, Annette ten Teije, Andre Dekker
Feasibility Estimation for Clinical Trials. HEALTHINF (2014)
Ahmed Ibrahim, Anca I. D. Bucur, Andre Dekker, M. Scott Marshall, David Pérez-Rey, Raúl Alonso-Calvo, Holger Stenzhorn, Sheng Yu, Cyril Krykwinski, Anouar Laarif, Keyur Mehta
Analysis of the Suitability of Existing Medical Ontologies for Building a Scalable Semantic Interoperability Solution Supporting Multi-site Collaboration in Oncology. BIBE (2014)
Johan van Soest, Tim Lustberg, Detlef Grittner, M. Scott Marshall, Lucas Persoon, Bas Nijsten, Peter Feltens, Andre Dekker
Towards a semantic PACS: Using Semantic Web technology to represent imaging data. MIE (2014)
Yuhua Gu, Virendra Kumar, Lawrence O. Hall, Dmitry B. Goldgof, Ching-Yen Li, René Korn, Claus Bendtsen, Emmanuel Rios Velazquez, Andre Dekker, Hugo J. W. L. Aerts, Philippe Lambin, Xiuli Li, Jie Tian, Robert A. Gatenby, Robert J. Gillies
Automated delineation of lung tumors from CT images using a single click ensemble segmentation approach. Pattern Recognit. 46 (3) (2013)
Georgi I. Nalbantov, Andre Dekker, Dirk De Ruysscher, Philippe Lambin, Evgueni N. Smirnov
The Combination of Clinical, Dose-Related and Imaging Features Helps Predict Radiation-Induced Normal-Tissue Toxicity in Lung-cancer Patients - An in-silico Trial Using Machine Learning Techniques. ICMLA (2) (2011)
Andre Dekker, Cary Dehing-Oberije, Dirk De Ruysscher, Philippe Lambin, Kartik Komati, Glenn Fung, Shipeng Yu, Andrew Hope, Wilfried De Neve, Yolande Lievens
Survival Prediction in Lung Cancer Treated with Radiotherapy: Bayesian Networks vs. Support Vector Machines in Handling Missing Data. ICMLA (2009)