Andreas Hildebrandt

Publication Activity (10 Years)

Years Active: 2001-2023
Publications (10 Years): 15

Top Topics

Mass Spectrometry

Protein Structure

Partial Evaluation

Top Venues

J. Comput. Sci.

Publications

David Teschner, David Gomez-Zepeda, Arthur Declercq, Mateusz K. Lacki, Seymen Avci, Konstantin Bob, Ute Distler, Thomas Michna, Lennart Martens, Stefan Tenzer, Andreas Hildebrandt
Ionmob: a Python package for prediction of peptide collisional cross-section values. Bioinform. 39 (9) (2023)
Thomas Kemmer, Sebastian Hack, Bertil Schmidt, Andreas Hildebrandt
CUDA-accelerated protein electrostatics in linear space. J. Comput. Sci. 70 (2023)
Konstantin Bob, David Teschner, Thomas Kemmer, David Gomez-Zepeda, Stefan Tenzer, Bertil Schmidt, Andreas Hildebrandt
Locality-sensitive hashing enables efficient and scalable signal classification in high-throughput mass spectrometry raw data. BMC Bioinform. 23 (1) (2022)
Felix Kallenborn, Andreas Hildebrandt, Bertil Schmidt
CARE: context-aware sequencing read error correction. Bioinform. 37 (7) (2021)
Ernst Althaus, Andreas Hildebrandt, Domenico Mosca
Learning Molecular Classes from Small Numbers of Positive Examples Using Graph Grammars. AlCoB (2021)
Lucas Grulich, Ralf Weigel, Andreas Hildebrandt, Michael Wand, Peter Spichtinger
Automatic shape detection of ice crystals. J. Comput. Sci. 54 (2021)
Anna Katharina Hildebrandt, Ernst Althaus, Andreas Hildebrandt
Privately Querying Privacy: Privacy Estimation with Guaranteed Privacy of User and Database Party. ALGOCLOUD (2021)
André Müller, Bertil Schmidt, Andreas Hildebrandt, Richard Membarth, Roland Leißa, Matthis Kruse, Sebastian Hack
AnySeq: A High Performance Sequence Alignment Library based on Partial Evaluation. IPDPS (2020)
André Müller, Bertil Schmidt, Andreas Hildebrandt, Richard Membarth, Roland Leißa, Matthis Kruse, Sebastian Hack
AnySeq: A High Performance Sequence Alignment Library based on Partial Evaluation. CoRR (2020)
Robin Kobus, José Manuel Abuín, André Müller, Sören Lukas Hellmann, Juan Carlos Pichel, Tomás F. Pena, Andreas Hildebrandt, Thomas Hankeln, Bertil Schmidt
A big data approach to metagenomics for all-food-sequencing. BMC Bioinform. 21 (1) (2020)
Thomas Kemmer, Sergej Rjasanow, Andreas Hildebrandt
NESSie.jl - Efficient and intuitive finite element and boundary element methods for nonlocal protein electrostatics in the Julia language. J. Comput. Sci. 28 (2018)
André Müller, Christian Hundt, Andreas Hildebrandt, Thomas Hankeln, Bertil Schmidt
MetaCache: context-aware classification of metagenomic reads using minhashing. Bioinform. 33 (23) (2017)
Ernst Althaus, Andreas Hildebrandt, Domenico Mosca
Graph Rewriting Based Search for Molecular Structures: Definitions, Algorithms, Hardness. STAF Workshops (2017)
Christian Hundt, Andreas Hildebrandt, Bertil Schmidt
rapidGSEA: Speeding up gene set enrichment analysis on multi-core CPUs and CUDA-enabled GPUs. BMC Bioinform. 17 (2016)
Hoang-Vu Dang, Bertil Schmidt, Andreas Hildebrandt, Tuan Tu Tran, Anna Katharina Hildebrandt
CUDA-enabled hierarchical ward clustering of protein structures based on the nearest neighbour chain algorithm. Int. J. High Perform. Comput. Appl. 30 (2) (2016)
Anna Katharina Hildebrandt, Daniel Stöckel, Nina M. Fischer, Luis de la Garza, Jens Krüger, Stefan Nickels, Marc Röttig, Charlotta Schärfe, Marcel Schumann, Philipp Thiel, Hans-Peter Lenhof, Oliver Kohlbacher, Andreas Hildebrandt
ballaxy: web services for structural bioinformatics. Bioinform. 31 (1) (2015)
Anna Katharina Hildebrandt, Matthias Dietzen, Thomas Lengauer, Hans-Peter Lenhof, Ernst Althaus, Andreas Hildebrandt
Efficient computation of root mean square deviations under rigid transformations. J. Comput. Chem. 35 (10) (2014)
Ernst Althaus, Markus Blumenstock, Alexej Disterhoft, Andreas Hildebrandt, Markus Krupp
Algorithms for the Maximum Weight Connected k -Induced Subgraph Problem. COCOA (2014)
Ernst Althaus, Andreas Hildebrandt, Anna Katharina Hildebrandt
A Greedy Algorithm for Hierarchical Complete Linkage Clustering. AlCoB (2014)
Tim Seifert, Andreas Lund, Benny Kneissl, Sabine C. Mueller, Christofer S. Tautermann, Andreas Hildebrandt
SKINK: a web server for string kernel based kink prediction in α-helices. Bioinform. 30 (12) (2014)
Hoang-Vu Dang, Bertil Schmidt, Andreas Hildebrandt, Anna Katharina Hildebrandt
Parallelized Clustering of Protein Structures on CUDA-Enabled GPUs. PDP (2014)
Matthias Dietzen, Elena Zotenko, Andreas Hildebrandt, Thomas Lengauer
Correction to On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking. J. Chem. Inf. Model. 54 (12) (2014)
Stefan Nickels, Daniel Stöckel, Sabine C. Mueller, Hans-Peter Lenhof, Andreas Hildebrandt, Anna Katharina Dehof
PresentaBALL - A powerful package for presentations and lessons in structural biology. BioVis (2013)
Markus Krupp, Timo Itzel, Thorsten Maass, Andreas Hildebrandt, Peter R. Galle, Andreas Teufel
CellLineNavigator: a workbench for cancer cell line analysis. Nucleic Acids Res. 41 (Database-Issue) (2013)
Anna Katharina Dehof, Simon Loew, Hans-Peter Lenhof, Andreas Hildebrandt
NightShift: NMR Shift Inference by General Hybrid Model Training - a Framework for NMR Chemical Shift Prediction. BMC Bioinform. 14 (2013)
Anna Katharina Hildebrandt, Ernst Althaus, Hans-Peter Lenhof, Chien-Wen Hung, Andreas Tholey, Andreas Hildebrandt
Efficient Interpretation of Tandem Mass Tags in Top-Down Proteomics. GCB (2013)
Matthias Dietzen, Elena Zotenko, Andreas Hildebrandt, Thomas Lengauer
On the Applicability of Elastic Network Normal Modes in Small-Molecule Docking. J. Chem. Inf. Model. 52 (3) (2012)
Stefan Nickels, Hienke Sminia, Sabine C. Mueller, Bas Kools, Anna Katharina Dehof, Hans-Peter Lenhof, Andreas Hildebrandt
ProteinScanAR - An Augmented Reality Web Application for High School Education in Biomolecular Life Sciences. IV (2012)
Martin Slawski, Rene Hussong, Andreas Tholey, Thomas Jakoby, Barbara Gregorius, Andreas Hildebrandt, Matthias Hein
Isotope pattern deconvolution for peptide mass spectrometry by non-negative least squares/least absolute deviation template matching. BMC Bioinform. 13 (2012)
Florian Benz, Andreas Hildebrandt, Sebastian Hack
A dynamic program analysis to find floating-point accuracy problems. PLDI (2012)
Benny Kneissl, Sabine C. Mueller, Christofer S. Tautermann, Andreas Hildebrandt
String Kernels and High-Quality Data Set for Improved Prediction of Kinked Helices in α-Helical Membrane Proteins. J. Chem. Inf. Model. 51 (11) (2011)
Anna Katharina Dehof, Alexander Rurainski, Quang Bao Anh Bui, Sebastian Böcker, Hans-Peter Lenhof, Andreas Hildebrandt
Automated bond order assignment as an optimization problem. Bioinform. 27 (5) (2011)
Jaydeep P. Bardhan, Andreas Hildebrandt
A fast solver for nonlocal electrostatic theory in biomolecular science and engineering. DAC (2011)
Mike Phillips, Iliyan Georgiev, Anna Katharina Dehof, Stefan Nickels, Lukas Marsalek, Hans-Peter Lenhof, Andreas Hildebrandt, Philipp Slusallek
Measuring properties of molecular surfaces using ray casting. IPDPS Workshops (2010)
Andreas Hildebrandt, Anna Katharina Dehof, Alexander Rurainski, Andreas Bertsch, Marcel Schumann, Nora C. Toussaint, Andreas Moll, Daniel Stöckel, Stefan Nickels, Sabine C. Mueller, Hans-Peter Lenhof, Oliver Kohlbacher
BALL - biochemical algorithms library 1.3. BMC Bioinform. 11 (2010)
Kugamoorthy Gajananan, Arturo Nakasone, Andreas Hildebrandt, Helmut Prendinger
A Novel Three-Dimensional Collaborative Online Platform for Bio-molecular Modeling. Smart Graphics (2010)
Lukas Marsalek, Anna Katharina Dehof, Iliyan Georgiev, Hans-Peter Lenhof, Philipp Slusallek, Andreas Hildebrandt
Real-Time Ray Tracing of Complex Molecular Scenes. IV (2010)
Sophie Weggler, V. Rutka, Andreas Hildebrandt
A new numerical method for nonlocal electrostatics in biomolecular simulations. J. Comput. Phys. 229 (11) (2010)
Alexander Rurainski, Andreas Hildebrandt, Hans-Peter Lenhof
A consensus line search algorithm for molecular potential energy functions. J. Comput. Chem. 30 (9) (2009)
Anna Katharina Dehof, Alexander Rurainski, Hans-Peter Lenhof, Andreas Hildebrandt
Automated Bond Order Assignment as an Optimization Problem. GCB (2009)
Rene Hussong, Barbara Gregorius, Andreas Tholey, Andreas Hildebrandt
Highly accelerated feature detection in proteomics data sets using modern graphics processing units. Bioinform. 25 (15) (2009)
Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole Schulz-Trieglaff, Alexandra Zerck, Knut Reinert, Oliver Kohlbacher
OpenMS - An open-source software framework for mass spectrometry. BMC Bioinform. 9 (2008)
Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Leinenbach, Andreas Hildebrandt, Christian G. Huber, Knut Reinert
Computational Quantification of Peptides from LC-MS Data. J. Comput. Biol. 15 (7) (2008)
Andreas Hildebrandt, Ralf Blossey, Sergej Rjasanow, Oliver Kohlbacher, Hans-Peter Lenhof
Electrostatic potentials of proteins in water: a structured continuum approach. Bioinform. 23 (2) (2007)
Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt, Knut Reinert
A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data. RECOMB (2007)
Eva Lange, Clemens Gröpl, Knut Reinert, Oliver Kohlbacher, Andreas Hildebrandt
High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques. Pacific Symposium on Biocomputing (2006)
Andreas Moll, Andreas Hildebrandt, Hans-Peter Lenhof, Oliver Kohlbacher
BALLView: a tool for research and education in molecular modeling. Bioinform. 22 (3) (2006)
Andreas Keller, Nicole Ludwig, Nicole Comtesse, Andreas Hildebrandt, Eckart Meese, Hans-Peter Lenhof
A minimally invasive multiple marker approach allows highly efficient detection of meningioma tumors. BMC Bioinform. 7 (2006)
Jan Küntzer, Torsten Blum, Andreas Gerasch, Christina Backes, Andreas Hildebrandt, Michael Kaufmann, Oliver Kohlbacher, Hans-Peter Lenhof
BN++ - A Biological Information System. J. Integr. Bioinform. 3 (2) (2006)
Hansjörg Toll, Peter Berger, Andreas Hofmann, Andreas Hildebrandt, Herbert Oberacher, Hans-Peter Lenhof, Christian G. Huber
Glycosylation Patterns of Proteins Studied by Liquid Chromatography-Mass Spectrometry and Bioinformatic Tools. Computational Proteomics (2005)
Andreas Moll, Andreas Hildebrandt, Hans-Peter Lenhof, Oliver Kohlbacher
BALLView: An object-oriented molecular visualization and modeling framework. J. Comput. Aided Mol. Des. 19 (11) (2005)
Eva Lange, Clemens Gröpl, Oliver Kohlbacher, Andreas Hildebrandt
High-accuracy peak picking of proteomics data. Computational Proteomics (2005)
Oliver Kohlbacher, Andreas Burchardt, Andreas Moll, Andreas Hildebrandt, Peter Bayer, Hans-Peter Lenhof
A NMR-spectra-based scoring function for protein docking. RECOMB (2001)