Parallelized Clustering of Protein Structures on CUDA-Enabled GPUs.
Hoang-Vu DangBertil SchmidtAndreas HildebrandtAnna Katharina HildebrandtPublished in: PDP (2014)
Keyphrases
- protein structure
- clustering algorithm
- general purpose
- protein sequences
- molecular biology
- gpu implementation
- parallel implementation
- secondary structure
- k means
- nuclear magnetic resonance
- amino acids
- clustering method
- protein structure alignment
- protein structure and function
- contact map
- computational approaches
- protein structure prediction
- graphics hardware
- parallel programming
- protein function
- graphics processors
- information theoretic
- experimentally determined
- self organizing maps
- protein tertiary structure
- constraint satisfaction problems