String Kernels and High-Quality Data Set for Improved Prediction of Kinked Helices in α-Helical Membrane Proteins.
Benny KneisslSabine C. MuellerChristofer S. TautermannAndreas HildebrandtPublished in: J. Chem. Inf. Model. (2011)
Keyphrases
- protein classification
- string kernels
- secondary structure
- amino acid sequences
- protein sequences
- data sets
- protein structure
- tertiary structure
- remote homology detection
- protein structure prediction
- computational biology
- grammatical inference
- spam filtering
- contact map
- psi blast
- amino acids
- protein function
- prediction accuracy
- support vector machine
- computational methods
- training set
- protein protein interactions
- biological sequences
- structural features
- kernel methods
- training data
- machine learning
- relation extraction
- edit distance
- nearest neighbor