Michal Linial

Publication Activity (10 Years)

Years Active: 1998-2024
Publications (10 Years): 8

Top Topics

Protein Function

Computational Biology

Post Transcriptional

Top Venues

Database J. Biol. Databases Curation

PLoS Comput. Biol.

Publications

Dan Ofer, Michal Linial
Automated annotation of disease subtypes. J. Biomed. Informatics 154 (2024)
Dan Ofer, Michal Linial
Whats next? Forecasting scientific research trends. CoRR (2023)
Nadav Brandes, Dan Ofer, Yam Peleg, Nadav Rappoport, Michal Linial
ProteinBERT: a universal deep-learning model of protein sequence and function. Bioinform. 38 (8) (2022)
Nadav Brandes, Nathan Linial, Michal Linial
PWAS: Proteome-Wide Association Study. RECOMB (2020)
Nadav Brandes, Nathan Linial, Michal Linial
Functional Evolutionary Modeling Exposes Overlooked Protein-Coding Genes Involved in Cancer. ISBRA (2020)
Kerem Wainer-Katsir, Michal Linial
BIRD: identifying cell doublets via biallelic expression from single cells. Bioinform. 36 (Supplement-1) (2020)
Shelly Mahlab-Aviv, Nathan Linial, Michal Linial
A cell-based probabilistic approach unveils the concerted action of miRNAs. PLoS Comput. Biol. 15 (12) (2019)
Nadav Brandes, Dan Ofer, Michal Linial
ASAP: a machine learning framework for local protein properties. Database J. Biol. Databases Curation 2016 (2016)
Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer, Michal Linial, Pardis Sabeti, Winston Hide, Burkhard Rost
Message from the ISCB: ISCB Ebola award for important future research on the computational biology of Ebola virus. Bioinform. 31 (4) (2015)
Peter D. Karp, Bonnie Berger, Diane E. Kovats, Thomas Lengauer, Michal Linial, Pardis Sabeti, Winston Hide, Burkhard Rost
ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus. PLoS Comput. Biol. 11 (1) (2015)
Nadav Rappoport, Michal Linial
ProtoBug: functional families from the complete proteomes of insects. Database J. Biol. Databases Curation 2015 (2015)
Dan Ofer, Michal Linial
ProFET: Feature engineering captures high-level protein functions. Bioinform. 31 (21) (2015)
Yitzhak Friedman, Solange Karsenty, Michal Linial
miRror-Suite: decoding coordinated regulation by microRNAs. Database J. Biol. Databases Curation 2014 (2014)
Solange Karsenty, Nadav Rappoport, Dan Ofer, Adva Zair, Michal Linial
NeuroPID: a classifier of neuropeptide precursors. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Nadav Rappoport, Amos Stern, Nathan Linial, Michal Linial
Entropy-driven partitioning of the hierarchical protein space. Bioinform. 30 (17) (2014)
Mark N. Wass, Sean D. Mooney, Michal Linial, Predrag Radivojac, Iddo Friedberg
The automated function prediction SIG looks back at 2013 and prepares for 2014. Bioinform. 30 (14) (2014)
Dan Ofer, Michal Linial
NeuroPID: a predictor for identifying neuropeptide precursors from metazoan proteomes. Bioinform. 30 (7) (2014)
Shelly Mahlab, Michal Linial
Speed Controls in Translating Secretory Proteins in Eukaryotes - an Evolutionary Perspective. PLoS Comput. Biol. 10 (1) (2014)
Yitzhak Friedman, Michal Linial
Mirror2.0: a Platform for Assessing the Joint Action of microRNAs in Cell regulation. J. Bioinform. Comput. Biol. 11 (6) (2013)
Shelly Mahlab, Itai Linial, Michal Linial
Translation Efficiency of Synaptic Proteins and Its Coding Sequence Determinants. BIOINFORMATICS (2013)
Nadav Rappoport, Michal Linial
Functional inference by ProtoNet family tree: the uncharacterized proteome of Daphnia pulex. BMC Bioinform. 14 (S-3) (2013)
Guy Naamati, Yitzhak Friedman, Ohad Balaga, Michal Linial
Susceptibility of the human pathways graphs to fragmentation by small sets of microRNAs. Bioinform. 28 (7) (2012)
Nadav Rappoport, Michal Linial
Viral Proteins Acquired from a Host Converge to Simplified Domain Architectures. PLoS Comput. Biol. 8 (2) (2012)
Burkhard Rost, Terry Gaasterland, Thomas Lengauer, Michal Linial, Scott Markel, B. J. Morrison McKay, Reinhard Schneider, Paul Horton, Janet Kelso
Paving the future: finding suitable ISMB venues. Bioinform. 28 (19) (2012)
Nadav Rappoport, Solange Karsenty, Amos Stern, Nathan Linial, Michal Linial
ProtoNet 6.0: organizing 10 million protein sequences in a compact hierarchical family tree. Nucleic Acids Res. 40 (Database-Issue) (2012)
Yosef Prat, Menachem Fromer, Nathan Linial, Michal Linial
Recovering key biological constituents through sparse representation of gene expression. Bioinform. 27 (5) (2011)
Manor Askenazi, Michal Linial
ARISTO: ontological classification of small molecules by electron ionization-mass spectrometry. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Regev Schweiger, Michal Linial, Nathan Linial
Generative probabilistic models for protein-protein interaction networks - the biclique perspective. Bioinform. 27 (13) (2011)
Yosef Prat, Menachem Fromer, Michal Linial, Nathan Linial
Geometric Interpretation of Gene Expression by Sparse Reconstruction of Transcript Profiles. RECOMB (2011)
Nadav Rappoport, Menachem Fromer, Regev Schweiger, Michal Linial
PANDORA: analysis of protein and peptide sets through the hierarchical integration of annotations. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Yitzhak Friedman, Guy Naamati, Michal Linial
MiRror: a combinatorial analysis web tool for ensembles of microRNAs and their targets. Bioinform. 26 (15) (2010)
Menachem Fromer, Chen Yanover, Amir Harel, Ori Shachar, Yair Weiss, Michal Linial
SPRINT: side-chain prediction inference toolbox for multistate protein design. Bioinform. 26 (19) (2010)
Guy Naamati, Manor Askenazi, Michal Linial
A predictor for toxin-like proteins exposes cell modulator candidates within viral genomes. Bioinform. 26 (18) (2010)
Assaf Gottlieb, Roy Varshavsky, Michal Linial, David Horn
UFFizi: a generic platform for ranking informative features. BMC Bioinform. 11 (2010)
Menachem Fromer, Michal Linial
Exposing the co-adaptive potential of protein-protein interfaces through computational sequence design. Bioinform. 26 (18) (2010)
Guy Naamati, Manor Askenazi, Michal Linial
ClanTox: a classifier of short animal toxins. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Knut Reinert, Christian G. Huber, Kathrin Marcus, Michal Linial, Oliver Kohlbacher
08101 Abstracts Collection - Computational Proteomics. Computational Proteomics (2008)
Yaniv Loewenstein, Michal Linial
Connect the dots: exposing hidden protein family connections from the entire sequence tree. ECCB (2008)
Yaniv Loewenstein, Elon Portugaly, Menachem Fromer, Michal Linial
Efficient algorithms for accurate hierarchical clustering of huge datasets: tackling the entire protein space. ISMB (2008)
Michal Linial, Jill P. Mesirov, B. J. Morrison McKay, Burkhard Rost
ISMB 2008 Toronto. PLoS Comput. Biol. 4 (6) (2008)
Roy Varshavsky, Menachem Fromer, Amit Man, Michal Linial
When Less Is More: Improving Classification of Protein Families with a Minimal Set of Global Features. WABI (2007)
Elon Portugaly, Nathan Linial, Michal Linial
EVEREST: a collection of evolutionary conserved protein domains. Nucleic Acids Res. 35 (Database-Issue) (2007)
Roy Varshavsky, Assaf Gottlieb, David Horn, Michal Linial
Unsupervised feature selection under perturbations: meeting the challenges of biological data. Bioinform. 23 (24) (2007)
Roy Varshavsky, David Horn, Michal Linial
Clustering Algorithms Optimizer: A Framework for Large Datasets. ISBRA (2007)
Roy Varshavsky, Assaf Gottlieb, Michal Linial, David Horn
Novel Unsupervised Feature Filtering of Biological Data. ISMB (Supplement of Bioinformatics) (2006)
Michal Linial
The Secrets of a Functional Synapse - From a Computational and Experimental Viewpoint. BMC Bioinform. 7 (S-1) (2006)
Elon Portugaly, Amir Harel, Nathan Linial, Michal Linial
EVEREST: automatic identification and classification of protein domains in all protein sequences. BMC Bioinform. 7 (2006)
Ori Sasson, Michal Linial
ProTarget: automatic prediction of protein structure novelty. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Iris Bahir, Michal Linial
ProTeus: identifying signatures in protein termini. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Ilona Kifer, Ori Sasson, Michal Linial
Predicting fold novelty based on ProtoNet hierarchical classification. Bioinform. 21 (7) (2005)
Noam Kaplan, Michal Linial
Automatic detection of false annotations via binary property clustering. BMC Bioinform. 6 (2005)
Roy Varshavsky, Michal Linial, David Horn
COMPACT: A Comparative Package for Clustering Assessment. ISPA Workshops (2005)
Noam Kaplan, Ori Sasson, Uri Inbar, Moriah Friedlich, Menachem Fromer, Hillel Fleischer, Elon Portugaly, Nathan Linial, Michal Linial
ProtoNet 4.0: A hierarchical classification of one million protein sequences. Nucleic Acids Res. 33 (Database-Issue) (2005)
Tali Sadka, Michal Linial
Families of membranous proteins can be characterized by the amino acid composition of their transmembrane domains. ISMB (Supplement of Bioinformatics) (2005)
Noam Kaplan, Moriah Friedlich, Menachem Fromer, Michal Linial
A functional hierarchical organization of the protein sequence space. BMC Bioinform. 5 (2004)
Ori Sasson, Avishay Vaaknin, Hillel Fleischer, Elon Portugaly, Yonatan Bilu, Nathan Linial, Michal Linial
ProtoNet: hierarchical classification of the protein space. Nucleic Acids Res. 31 (1) (2003)
Elon Portugaly, Ilona Kifer, Michal Linial
Selecting targets for structural determination by navigating in a graph of protein families. Bioinform. 18 (7) (2002)
Yonatan Bilu, Michal Linial
Functional Consequences in Metabolic Pathways from Phylogenetic Profiles. WABI (2002)
Ori Sasson, Nathan Linial, Michal Linial
The metric space of proteins-comparative study of clustering algorithms. ISMB (2002)
Yonatan Bilu, Michal Linial
The Advantage of Functional Prediction Based on Clustering of Yeast Genes and Its Correlation with Non-Sequence Based Classifications. J. Comput. Biol. 9 (2) (2002)
Yonatan Bilu, Michal Linial
On the predictive power of sequence similarity in yeast. RECOMB (2001)
Nir Friedman, Michal Linial, Iftach Nachman, Dana Pe'er
Using Bayesian Networks to Analyze Expression Data. J. Comput. Biol. 7 (3-4) (2000)
Nir Friedman, Michal Linial, Iftach Nachman, Dana Pe'er
Using Bayesian networks to analyze expression data. RECOMB (2000)
Elon Portugaly, Michal Linial
Probabilities for having a new fold on the basis of a map of all protein sequences. RECOMB (2000)
Golan Yona, Nathan Linial, Michal Linial
ProtoMap: automatic classification of protein sequences and hierarchy of protein families. Nucleic Acids Res. 28 (1) (2000)
Golan Yona, Nathan Linial, Naftali Tishby, Michal Linial
A Map of the Protein Space: An Automatic Hierarchical Classification of all Protein Sequences. ISMB (1998)