Sean D. Mooney

Publication Activity (10 Years)

Years Active: 2002-2023
Publications (10 Years): 26

Top Topics

Artificial Intelligence In Medicine

Genome Sequencing

Potential Impact

Top Venues

J. Am. Medical Informatics Assoc.

PLoS Comput. Biol.

Publications

Timothy Bergquist, Thomas Schaffter, Yao Yan, Thomas Yu, Justin Prosser, Jifan Gao, Guanhua Chen, Lukasz Charzewski, Zofia Nawalany, Ivan Brugere, Renata Retkute, Alidivinas Prusokas, Augustinas Prusokas, Yonghwa Choi, Sanghoon Lee, Junseok Choe, Inggeol Lee, Sunkyu Kim, Jaewoo Kang, Sean D. Mooney, Justin Guinney
Evaluation of crowdsourced mortality prediction models as a framework for assessing artificial intelligence in medicine. J. Am. Medical Informatics Assoc. 31 (1) (2023)
Chethan Jujjavarapu, Pradeep Suri, Vikas Pejaver, Janna Friedly, Laura S. Gold, Eric Meier, Trevor Cohen, Sean D. Mooney, Patrick J. Heagerty, Jeffrey G. Jarvik
Predicting decompression surgery by applying multimodal deep learning to patients' structured and unstructured health data. BMC Medical Informatics Decis. Mak. 23 (1) (2023)
Chao Yan, Yao Yan, Zhiyu Wan, Ziqi Zhang, Larsson Omberg, Justin Guinney, Sean D. Mooney, Bradley A. Malin
A Multifaceted Benchmarking of Synthetic Electronic Health Record Generation Models. CoRR (2022)
Serena Jinchen Xie, Flavia Kapos, Stephen J. Mooney, Sean D. Mooney, Kari A. Stephens, Andrea L. Hartzler, Abhishek Pratap
Geospatial divide in real-world EHR data: Analytical workflow to assess regional biases and potential impact on health equity. AMIA (2022)
Yao Yan, Thomas Yu, Kathleen Muenzen, Sijia Liu, Connor Boyle, George Koslowski, Jiaxin Zheng, Nicholas J. Dobbins, Clement Essien, Hongfang Liu, Larsson Omberg, Meliha Yestigen, Bradley Taylor, James A. Eddy, Justin Guinney, Sean D. Mooney, Thomas Schaffter
The NLP Sandbox: an efficient model-to-data system to enable federated and unbiased evaluation of clinical NLP models. CoRR (2022)
Chao Yan, Yao Yan, Ziqi Zhang, Zhiyu Wan, Justin Guinney, Sean D. Mooney, Bradley A. Malin
Assessing Machine Learning Based Generators for Synthetic Electronic Health Records: A Benchmarking. AMIA (2022)
Yao Yan, Thomas Schaffter, Timothy Bergquist, Thomas Yu, Justin Prosser, Sean D. Mooney, Justin Guinney
A Continuous Crowd-sourced Challenge for Benchmarking COVID-19 Health Outcome Prediction. AMIA (2021)
Jimmy Phuong, Christina Bandaragoda, Shefali Haldar, Kari A. Stephens, Patricia Ordóñez, Sean D. Mooney, Andrea L. Hartzler
Information needs and priority use cases of population health researchers to improve preparedness for future hurricanes and floods. J. Am. Medical Informatics Assoc. 28 (2) (2021)
Diane M. Korngiebel, Sean D. Mooney
Considering the possibilities and pitfalls of Generative Pre-trained Transformer 3 (GPT-3) in healthcare delivery. npj Digit. Medicine 4 (2021)
Lara Mangravite, Sean D. Mooney, Iddo Friedberg, Justin Guinney
Establishing the reliability of algorithms. PSB (2021)
Nicholas J. Dobbins, Clifford H. Spital, Robert A. Black, Jason M. Morrison, Bas de Veer, Elizabeth Zampino, Robert D. Harrington, Bethene D. Britt, Kari A. Stephens, Adam B. Wilcox, Peter Tarczy-Hornoch, Sean D. Mooney
Leaf: an open-source, model-agnostic, data-driven web application for cohort discovery and translational biomedical research. J. Am. Medical Informatics Assoc. 27 (1) (2020)
Timothy Bergquist, Yao Yan, Thomas Schaffter, Thomas Yu, Vikas Pejaver, Noah Hammarlund, Justin Prosser, Justin Guinney, Sean D. Mooney
Piloting a model-to-data approach to enable predictive analytics in health care through patient mortality prediction. J. Am. Medical Informatics Assoc. 27 (9) (2020)
Abhishek Pratap, Elias Chaibub Neto, Phil Snyder, Carl Stepnowsky, Noémie Elhadad, Daniel Grant, Matthew H. Mohebbi, Sean D. Mooney, Christine Suver, John Wilbanks, Lara M. Mangravite, Patrick J. Heagerty, Pat A. Areán, Larsson Omberg
Indicators of retention in remote digital health studies: a cross-study evaluation of 100, 000 participants. npj Digit. Medicine 3 (2020)
Jimmy Phuong, Christina Bandaragoda, Erkan Istanbulluoglu, Claire Beveridge, Ronda Strauch, Landung Setiawan, Sean D. Mooney
Automated retrieval, preprocessing, and visualization of gridded hydrometeorology data products for spatial-temporal exploratory analysis and intercomparison. Environ. Model. Softw. 116 (2019)
Timothy Bergquist, Vikas Pejaver, Noah Hammarlund, Sean D. Mooney, Stephen J. Mooney
Detecting Seasonal, Holiday, and Rare Events from Trauma Data in the Electronic Health Record. AMIA (2019)
Kymberleigh A. Pagel, Danny Antaki, Aojie Lian, Matthew E. Mort, David N. Cooper, Jonathan Sebat, Lilia M. Iakoucheva, Sean D. Mooney, Predrag Radivojac
Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome. PLoS Comput. Biol. 15 (6) (2019)
Sean D. Mooney
Continuing challenges swirl around bioinformatics service delivery. J. Biomed. Informatics 94 (2019)
Yongqun He, Edison Ong, Jennifer Schaub, Frederick Dowd, John F. O'Toole, Anastasios Siapos, Christian G. Reich, Sarah Seager, Ling Wang, Hong Yu, Jie Zheng, Christian J. Stoeckert Jr., Xiaolin Yang, Sheng Yang, Becky Steck, Christopher Park, Laura Barisoni, Matthias Kretzler, Jonathan Himmelfarb, Ravi Iyengar, Sean D. Mooney
OPMI: the Ontology of Precision Medicine and Investigation and its Support for Clinical Data and Metadata Representation and Analysis. ICBO (2019)
Abhishek Pratap, Elias Chaibub Neto, Phil Snyder, Carl Stepnowsky, Noémie Elhadad, Daniel Grant, Matthew H. Mohebbi, Sean D. Mooney, Christine Suver, John Wilbanks, Lara Mangravite, Patrick Heagerty, Pat A. Areán, Larsson Omberg
Indicators of retention in remote digital health studies: A cross-study evaluation of 100, 000 participants. CoRR (2019)
Yongqun He, Becky Steck, Edison Ong, Laura Mariani, Chrysta Lienczewski, Ulysses J. Balis, Matthias Kretzler, Jonathan Himmelfarb, John F. Bertram, Evren U. Azeloglu, Ravi Iyengar, Deborah Hoshizaki, Sean D. Mooney
KTAO: A Kidney Tissue Atlas Ontology to Support Community-Based Kidney Knowledge Base Development and Data Integration. ICBO (2018)
Alexander A. Morgan, Dana C. Crawford, Joshua C. Denny, Sean D. Mooney, Bruce J. Aronow, Steven E. Brenner
Session Introduction. PSB (2017)
Kymberleigh A. Pagel, Vikas Pejaver, Guan Ning Lin, Hyun-Jun Nam, Matthew E. Mort, David N. Cooper, Jonathan Sebat, Lilia M. Iakoucheva, Sean D. Mooney, Predrag Radivojac
When loss-of-function is loss of function: assessing mutational signatures and impact of loss-of-function genetic variants. Bioinform. 33 (14) (2017)
Abhishek Pratap, Joaquin A. Anguera, Brenna N. Renn, Elias Chaibub Neto, Joshua Volponi, Sean D. Mooney, Pat A. Areán
The feasibility of using smartphones to assess and remediate depression in Hispanic/Latino individuals nationally. UbiComp/ISWC Adjunct (2017)
Alexander A. Morgan, Sean D. Mooney, Bruce J. Aronow, Steven E. Brenner
Session Introduction. PSB (2016)
Steven E. Brenner, Stephen Kingsmore, Sean D. Mooney, Robert Nussbaum, Jennifer Puck
Use of Genome Data in Newborns as a Starting Point for Life-Long Precision Medicine. PSB (2016)
Jose Lugo-Martinez, Vikas Pejaver, Kymberleigh A. Pagel, Shantanu Jain, Matthew E. Mort, David N. Cooper, Sean D. Mooney, Predrag Radivojac
The Loss and Gain of Functional Amino Acid Residues Is a Common Mechanism Causing Human Inherited Disease. PLoS Comput. Biol. 12 (8) (2016)
Iddo Friedberg, Mark N. Wass, Sean D. Mooney, Predrag Radivojac
Ten Simple Rules for a Community Computational Challenge. PLoS Comput. Biol. 11 (4) (2015)
Yun-Ching Chen, Christopher Douville, Cheng Wang, Noushin Niknafs, Grace Yeo, Violeta Beleva Guthrie, Hannah Carter, Peter D. Stenson, David N. Cooper, Biao Li, Sean D. Mooney, Rachel Karchin
A Probabilistic Model to Predict Clinical Phenotypic Traits from Genome Sequencing. PLoS Comput. Biol. 10 (9) (2014)
Mark N. Wass, Sean D. Mooney, Michal Linial, Predrag Radivojac, Iddo Friedberg
The automated function prediction SIG looks back at 2013 and prepares for 2014. Bioinform. 30 (14) (2014)
Tobias Wittkop, Emily TerAvest, Uday S. Evani, K. Mathew Fleisch, Ari E. Berman, Corey Powell, Nigam H. Shah, Sean D. Mooney
STOP using just GO: a multi-ontology hypothesis generation tool for high throughput experimentation. BMC Bioinform. 14 (2013)
Tobias Wittkop, Sean D. Mooney
Introduction: Advances in Computational Systems Bioinformatics. J. Bioinform. Comput. Biol. 9 (2) (2011)
Troy B. Hawkins, Jessica Dantzer, Brandon Peters, Mary Dinauer, Keithanne Mockaitis, Sean D. Mooney, Kenneth Cornetta
Identifying viral integration sites using SeqMap 2.0. Bioinform. 27 (5) (2011)
Fuxiao Xin, Steven A. Myers, Yong Fuga Li, David N. Cooper, Sean D. Mooney, Predrag Radivojac
Structure-based kernels for the prediction of catalytic residues and their involvement in human inherited disease. Bioinform. 26 (16) (2010)
Fuxiao Xin, Steven A. Myers, Yong Fuga Li, David N. Cooper, Sean D. Mooney, Predrag Radivojac
Structure-based kernels for the prediction of catalytic residues and their involvement in human inherited disease. BMC Bioinform. 11 (S-10) (2010)
Shuyan Li, Lilia M. Iakoucheva, Sean D. Mooney, Predrag Radivojac
Loss of Post-Translational Modification Sites in Disease. Pacific Symposium on Biocomputing (2010)
Biao Li, Vidhya G. Krishnan, Matthew E. Mort, Fuxiao Xin, Kishore K. Kamati, David N. Cooper, Sean D. Mooney, Predrag Radivojac
Automated inference of molecular mechanisms of disease from amino acid substitutions. Bioinform. 25 (21) (2009)
Sean D. Mooney, Peter H. Baenziger
Extensible open source content management systems and frameworks: a solution for many needs of a bioinformatics group. Briefings Bioinform. 9 (1) (2008)
Predrag Radivojac, Peter H. Baenziger, Maricel G. Kann, Matthew E. Mort, Matthew W. Hahn, Sean D. Mooney
Gain and loss of phosphorylation sites in human cancer. ECCB (2008)
Arti Singh, Adebayo Olowoyeye, Peter H. Baenziger, Jessica Dantzer, Maricel G. Kann, Predrag Radivojac, Randy W. Heiland, Sean D. Mooney
MutDB: update on development of tools for the biochemical analysis of genetic variation. Nucleic Acids Res. 36 (Database-Issue) (2008)
Patricia C. Babbitt, Philip E. Bourne, Sean D. Mooney
Introduction to Informatics Approaches in Structural Genomics: Modeling and Representation of Function from Macromolecular STructure. Pacific Symposium on Biocomputing (2005)
Sean D. Mooney
Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis. Briefings Bioinform. 6 (1) (2005)
Jessica Dantzer, Charles W. Moad, Randy W. Heiland, Sean D. Mooney
MutDB services: interactive structural analysis of mutation data. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Sean D. Mooney, Philip E. Bourne, Patricia C. Babbitt
Session Introduction. Pacific Symposium on Biocomputing (2004)
Sean D. Mooney, Patricia C. Babbitt
Informatics Approaches in Structural Genomics - Session Introduction. Pacific Symposium on Biocomputing (2003)
Sean D. Mooney, Russ B. Altman
MutDB: annotating human variation with functionally relevant data. Bioinform. 19 (14) (2003)
Rattikorn Hewett, John H. Leuchner, Sean D. Mooney, Teri E. Klein
Analysis of Mutations in the COLIA1 Gene with Second-Order Rule Induction. Int. J. Pattern Recognit. Artif. Intell. 17 (5) (2003)
Rattikorn Hewett, John H. Leuchner, Choh-Man Teng, Sean D. Mooney, Teri E. Klein
Compression-Based Induction and Genome Data. FLAIRS Conference (2002)
Sean D. Mooney, Teri E. Klein
The functional importance of disease-associated mutation. BMC Bioinform. 3 (2002)