Kevin Bretonnel Cohen

Publication Activity (10 Years)

Years Active: 2007-2022
Publications (10 Years): 18

Top Topics

Biomedical Literature

Special Section

Language Processing

Tensor Decomposition

Top Venues

Database J. Biol. Databases Curation

Pacific Symposium on Biocomputing

Lang. Resour. Evaluation

Publications

Kaiyin Zhou, Sheng Zhang, Yuxing Wang, Kevin Bretonnel Cohen, Jin-Dong Kim, Qi Luo, Xinzhi Yao, Xingyu Zhou, Jingbo Xia
High-quality gene/disease embedding in a multi-relational heterogeneous graph after a joint matrix/tensor decomposition. J. Biomed. Informatics 126 (2022)
Kaiyin Zhou, Yuxing Wang, Kevin Bretonnel Cohen, Jin-Dong Kim, Xiaohang Ma, Zhixue Shen, Xiangyu Meng, Jingbo Xia
Bridging heterogeneous mutation data to enhance disease gene discovery. Briefings Bioinform. 22 (5) (2021)
Kevin Bretonnel Cohen, Anna M. Ripple, Asma Ben Abacha, Olivier Bodenreider, Orin Hargraves, Karin Verspoor, Pierre Zweigenbaum, Dina Demner-Fushman
Reproducibility in biomedical natural language processing: A FAIR approach to what we need to know. AMIA (2021)
Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi
BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research 9 (2020)
Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research 8 (2019)
Rachel Bawden, Kevin Bretonnel Cohen, Cristian Grozea, Antonio Jimeno-Yepes, Madeleine Kittner, Martin Krallinger, Nancy Mah, Aurélie Névéol, Mariana L. Neves, Felipe Soares, Amy Siu, Karin Verspoor, Maika Vicente Navarro
Findings of the WMT 2019 Biomedical Translation Shared Task: Evaluation for MEDLINE Abstracts and Biomedical Terminologies. WMT (3) (2019)
Daniela Gîfu, Diana Trandabat, Kevin Bretonnel Cohen, Jingbo Xia
The Curative Power of Medical Data. JCDL (2018)
Kaiyin Zhou, Xinzhi Yao, Shuguang Wang, Jin-Dong Kim, Kevin Bretonnel Cohen, Ruiying Chen, Yuxing Wang, Jingbo Xia
Trigger Words Detection by Integrating Attention Mechanism into Bi-LSTM Neural Network - A Case Study in PubMED-Wide Trigger Words Detection for Pancreatic Cancer. CCL (2018)
Yuxing Wang, Xinzhi Yao, Kaiyin Zhou, Xuan Qin, Jin-Dong Kim, Kevin Bretonnel Cohen, Jingbo Xia
Guideline Design of an Active Gene Annotation Corpus for the Purpose of Drug Repurposing. CISP-BMEI (2018)
Mayla Boguslav, Kevin Bretonnel Cohen
Inter-Annotator Agreement and the Upper Limit on Machine Performance: Evidence from Biomedical Natural Language Processing. MedInfo (2017)
Kevin Bretonnel Cohen, Aurélie Névéol, Jingbo Xia, Negacy D. Hailu, Cyril Grouin, Lawrence E. Hunter, Pierre Zweigenbaum
Reproducibility in Biomedical Natural Language Processing. AMIA (2017)
Aurélie Névéol, Aude Robert, Robert Anderson, Kevin Bretonnel Cohen, Cyril Grouin, Thomas Lavergne, Grégoire Rey, Claire Rondet, Pierre Zweigenbaum
CLEF eHealth 2017 Multilingual Information Extraction task Overview: ICD10 Coding of Death Certificates in English and French. CLEF (Working Notes) (2017)
Ignacio Tripodi, Kevin Bretonnel Cohen, Lawrence E. Hunter
A semantic knowledge-base approach to drug-drug interaction discovery. BIBM (2017)
António Branco, Kevin Bretonnel Cohen, Piek Vossen, Nancy Ide, Nicoletta Calzolari
Erratum to: Replicability and reproducibility of research results for human language technology: introducing an LRE special section. Lang. Resour. Evaluation 51 (1) (2017)
António Branco, Kevin Bretonnel Cohen, Piek Vossen, Nancy Ide, Nicoletta Calzolari
Replicability and reproducibility of research results for human language technology: introducing an LRE special section. Lang. Resour. Evaluation 51 (1) (2017)
Aurélie Névéol, Kevin Bretonnel Cohen, Cyril Grouin, Thierry Hamon, Thomas Lavergne, Liadh Kelly, Lorraine Goeuriot, Grégoire Rey, Aude Robert, Xavier Tannier, Pierre Zweigenbaum
Clinical Information Extraction at the CLEF eHealth Evaluation lab 2016. CLEF (Working Notes) (2016)
Lynette Hirschman, Karën Fort, Stéphanie Boué, Nikos Kyrpides, Rezarta Islamaj Dogan, Kevin Bretonnel Cohen
Crowdsourcing and curation: perspectives from biology and natural language processing. Database J. Biol. Databases Curation 2016 (2016)
Aurélie Névéol, Kevin Bretonnel Cohen, Cyril Grouin, Aude Robert
Replicability of Research in Biomedical Natural Language Processing: a pilot evaluation for a coding task. Louhi@EMNLP (2016)
Kristine A. Pattin, Anna C. Greene, Russ B. Altman, Kevin Bretonnel Cohen, Elizabeth Wethington, Carsten Görg, Lawrence E. Hunter, Spencer V. Muse, Predrag Radivojac, Jason H. Moore
Training the Next Generation of Quantitative Biologists in the Era of Big Data. Pacific Symposium on Biocomputing (2015)
Cecilia N. Arighi, Cathy H. Wu, Kevin Bretonnel Cohen, Lynette Hirschman, Martin Krallinger, Alfonso Valencia, Zhiyong Lu, W. John Wilbur, Thomas C. Wiegers
BioCreative-IV virtual issue. Database J. Biol. Databases Curation 2014 (2014)
Graciela Gonzalez, Kevin Bretonnel Cohen, Robert Leaman, Casey S. Greene, Nigam Shah, Maricel G. Kann, Jieping Ye
Session introduction. Pacific Symposium on Biocomputing (2014)
Richard Osborne, Alan R. Aronson, Kevin Bretonnel Cohen
A repository of semantic types in the MIMIC II database clinical notes. BioNLP@ACL (2014)
Toshiaki Katayama, Mark D. Wilkinson, Kiyoko F. Aoki-Kinoshita, Shuichi Kawashima, Yasunori Yamamoto, Atsuko Yamaguchi, Shinobu Okamoto, Shin Kawano, Jin-Dong Kim, Yue Wang, Hongyan Wu, Yoshinobu Kano, Hiromasa Ono, Hidemasa Bono, Simon Kocbek, Jan Aerts, Yukie Akune, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Pier Luigi Buttigieg, Matthew P. Campbell, Yi-an Chen, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Alexandru Constantin
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. J. Biomed. Semant. 5 (2014)
Negacy D. Hailu, Natalya Panteleyeva, Kevin Bretonnel Cohen
Temporal Expression Recognition for Cell Cycle Phase Concepts in Biomedical Literature. BioNLP@ACL (2014)
Irina P. Temnikova, Kevin Bretonnel Cohen
Recognizing Sublanguages in Scientific Journal Articles through Closure Properties. BioNLP@ACL (2013)
Qi Li, Louise Deléger, Todd Lingren, Haijun Zhai, Megan Kaiser, Laura Stoutenborough, Anil G. Jegga, Kevin Bretonnel Cohen, Imre Solti
Mining FDA drug labels for medical conditions. BMC Medical Informatics Decis. Mak. 13 (2013)
Donald C. Comeau, Rezarta Islamaj Dogan, Paolo Ciccarese, Kevin Bretonnel Cohen, Martin Krallinger, Florian Leitner, Zhiyong Lu, Yifan Peng, Fabio Rinaldi, Manabu Torii, Alfonso Valencia, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
BioC: a minimalist approach to interoperability for biomedical text processing. Database J. Biol. Databases Curation 2013 (2013)
Graciela Gonzalez, Kevin Bretonnel Cohen, Casey S. Greene, Udo Hahn, Maricel G. Kann, Robert Leaman, Nigam Shah, Jieping Ye
Session introduction. Pacific Symposium on Biocomputing (2013)
Pawel Matykiewicz, Kevin Bretonnel Cohen, Katherine D. Holland, Tracy A. Glauser, Shannon M. Standridge, Karin M. Verspoor, John Pestian
Earlier Identification of Epilepsy Surgery Candidates Using Natural Language Processing. BioNLP@ACL (2013)
Udo Hahn, Kevin Bretonnel Cohen, Yael Garten, Nigam H. Shah
Mining the pharmacogenomics literature - a survey of the state of the art. Briefings Bioinform. 13 (4) (2012)
Karin Verspoor, Kevin Bretonnel Cohen, Arrick Lanfranchi, Colin Warner, Helen L. Johnson, Christophe Roeder, Jinho D. Choi, Christopher S. Funk, Yuriy Malenkiy, Miriam Eckert, Nianwen Xue, William A. Baumgartner Jr., Michael Bada, Martha Palmer, Lawrence E. Hunter
A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools. BMC Bioinform. 13 (2012)
Kevin Bretonnel Cohen, Yael Garten, Nigam Shah, Udo Hahn
Session introduction. Pacific Symposium on Biocomputing (2012)
Cathy H. Wu, Cecilia N. Arighi, Kevin Bretonnel Cohen, Lynette Hirschman, Martin Krallinger, Zhiyong Lu, Carolyn J. Mattingly, Alfonso Valencia, Thomas C. Wiegers, W. John Wilbur
BioCreative-2012 Virtual Issue. Database J. Biol. Databases Curation 2012 (2012)
Kevin Bretonnel Cohen, Yael Garten, Udo Hahn, Nigam H. Shah
Workshop Introduction. Pacific Symposium on Biocomputing (2011)
Cecilia N. Arighi, Zhiyong Lu, Martin Krallinger, Kevin Bretonnel Cohen, W. John Wilbur, Alfonso Valencia, Lynette Hirschman, Cathy H. Wu
Overview of the BioCreative III Workshop. BMC Bioinform. 12 (S-8) (2011)
Kevin Bretonnel Cohen
Integrating text mining into high-throughput assay analysis. BMC Bioinform. 11 (S-5) (2010)
Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, Kevin Bretonnel Cohen
Frontiers of biomedical text mining: current progress. Briefings Bioinform. 8 (5) (2007)