Alan R. Aronson

Publication Activity (10 Years)

Years Active: 1976-2019
Publications (10 Years): 5

Top Topics

Future Directions

Umls Metathesaurus

Biomedical Literature

Top Venues

J. Am. Medical Informatics Assoc.

Publications

Chris J. Lu, Alan R. Aronson, Sonya E. Shooshan, Dina Demner-Fushman
Spell checker for consumer language (CSpell). J. Am. Medical Informatics Assoc. 26 (3) (2019)
Dina Demner-Fushman, James G. Mork, Willie J. Rogers, Sonya E. Shooshan, Laritza M. Rodriguez, Alan R. Aronson
Finding medication doses in the literature. AMIA (2018)
François-Michel Lang, James G. Mork, Dina Demner-Fushman, Alan R. Aronson
Increasing UMLS Coverage and Reducing Ambiguity via Automated Creation of Synonymous Terms. AMIA (2018)
Dina Demner-Fushman, Willie J. Rogers, Alan R. Aronson
MetaMap Lite: an evaluation of a new Java implementation of MetaMap. J. Am. Medical Informatics Assoc. 24 (4) (2017)
James G. Mork, Alan R. Aronson, Dina Demner-Fushman
12 years on - Is the NLM medical text indexer still useful and relevant? J. Biomed. Semant. 8 (1) (2017)
Antonio Jimeno-Yepes, Laura Plaza, Jorge Carrillo de Albornoz, James G. Mork, Alan R. Aronson
Feature engineering for MEDLINE citation categorization with MeSH. BMC Bioinform. 16 (2015)
Richard Osborne, Alan R. Aronson, Kevin Bretonnel Cohen
A repository of semantic types in the MIMIC II database clinical notes. BioNLP@ACL (2014)
James G. Mork, Dina Demner-Fushman, Susan Schmidt, Alan R. Aronson
Recent Enhancements to the NLM Medical Text Indexer. CLEF (Working Notes) (2014)
James G. Mork, Dina Demner-Fushman, Susan Schmidt, Alan R. Aronson
Vocabulary Density Method for Customized Indexing of MEDLINE Journals. AMIA (2014)
David A. Hanauer, Mohammed Saeed, Kai Zheng, Qiaozhu Mei, Kerby Shedden, Alan R. Aronson, Naren Ramakrishnan
Applying MetaMap to Medline for identifying novel associations in a large clinical dataset: a feasibility analysis. J. Am. Medical Informatics Assoc. 21 (5) (2014)
Antonio Jimeno-Yepes, James G. Mork, Dina Demner-Fushman, Alan R. Aronson
Comparison and combination of several MeSH indexing approaches. AMIA (2013)
Antonio Jimeno-Yepes, James G. Mork, Alan R. Aronson
Identifying Publication Types Using Machine Learning. BioASQ@CLEF (2013)
Antonio José Jimeno-Yepes, Laura Plaza, James G. Mork, Alan R. Aronson, Alberto Díaz
MeSH indexing based on automatically generated summaries. BMC Bioinform. 14 (2013)
Antonio Jimeno-Yepes, J. Caitlin Sticco, James G. Mork, Alan R. Aronson
GeneRIF indexing: sentence selection based on machine learning. BMC Bioinform. 14 (2013)
Dina Demner-Fushman, James G. Mork, Alan R. Aronson
Mining MEDLINE for problems associated with vitamin D. AMIA (2013)
Antonio Jimeno-Yepes, James G. Mork, Alan R. Aronson
Using the Argumentative Structure of Scientific Literature to Improve Information Access. BioNLP@ACL (2013)
James G. Mork, Antonio Jimeno-Yepes, Alan R. Aronson
The NLM Medical Text Indexer System for Indexing Biomedical Literature. BioASQ@CLEF (2013)
Antonio Jimeno-Yepes, James G. Mork, Bartlomiej Wilkowski, Dina Demner-Fushman, Alan R. Aronson
MEDLINE MeSH indexing: lessons learned from machine learning and future directions. IHI (2012)
Dina Demner-Fushman, Swapna Abhyankar, Antonio Jimeno-Yepes, Russell F. Loane, François-Michel Lang, James G. Mork, Nicolas Ide, Alan R. Aronson
NLM at TREC 2012 Medical Records Track. TREC (2012)
Antonio Jimeno-Yepes, Alan R. Aronson
Knowledge-based and knowledge-lean methods combined in unsupervised word sense disambiguation. IHI (2012)
Antonio Jimeno-Yepes, James G. Mork, Dina Demner-Fushman, Alan R. Aronson
A One-Size-Fits-All Indexing Method Does Not Exist: Automatic Selection Based on Meta-Learning. J. Comput. Sci. Eng. 6 (2) (2012)
Antonio Jimeno-Yepes, Alan R. Aronson
Integration of UMLS and MEDLINE in Unsupervised Word Sense Disambiguation. AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text (2012)
Dina Demner-Fushman, Swapna Abhyankar, Antonio Jimeno-Yepes, Russell F. Loane, Bastien Rance, François-Michel Lang, Nicholas C. Ide, Emilia Apostolova, Alan R. Aronson
A Knowledge-Based Approach to Medical Records Retrieval. TREC (2011)
Laura Plaza, Antonio José Jimeno-Yepes, Alberto Díaz, Alan R. Aronson
Studying the correlation between different word sense disambiguation methods and summarization effectiveness in biomedical texts. BMC Bioinform. 12 (2011)
Antonio Jimeno-Yepes, Alan R. Aronson
Self-training and co-training in biomedical word sense disambiguation. BioNLP@ACL (2011)
Antonio José Jimeno-Yepes, Bridget T. McInnes, Alan R. Aronson
Exploiting MeSH indexing in MEDLINE to generate a data set for word sense disambiguation. BMC Bioinform. 12 (2011)
Antonio Jimeno-Yepes, Bridget T. McInnes, Alan R. Aronson
Collocation analysis for UMLS knowledge-based word sense disambiguation. BMC Bioinform. 12 (S-3) (2011)
James G. Mork, Olivier Bodenreider, Dina Demner-Fushman, Rezarta Islamaj Dogan, François-Michel Lang, Zhiyong Lu, Aurélie Névéol, Lee B. Peters, Sonya E. Shooshan, Alan R. Aronson
Extracting Rx information from clinical narrative. J. Am. Medical Informatics Assoc. 17 (5) (2010)
Antonio Jimeno-Yepes, Alan R. Aronson
Knowledge-based biomedical word sense disambiguation: comparison of approaches. BMC Bioinform. 11 (2010)
Antonio Jimeno-Yepes, Alan R. Aronson
Query Expansion for UMLS Metathesaurus Disambiguation Based on Automatic Corpus Extraction. ICMLA (2010)
Dina Demner-Fushman, James G. Mork, Sonya E. Shooshan, Alan R. Aronson
UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text. J. Biomed. Informatics 43 (4) (2010)
Antonio Jimeno-Yepes, Alan R. Aronson
Improving an automatically extracted corpus for UMLS Metathesaurus word sense disambiguation. Proces. del Leng. Natural 45 (2010)
Alan R. Aronson, François-Michel Lang
An overview of MetaMap: historical perspective and recent advances. J. Am. Medical Informatics Assoc. 17 (3) (2010)
Aurélie Névéol, James G. Mork, Alan R. Aronson
Comment on 'MeSH-up: effective MeSH text classification for improved document retrieval'. Bioinform. 25 (20) (2009)
Aurélie Névéol, Sonya E. Shooshan, Susanne M. Humphrey, James G. Mork, Alan R. Aronson
A recent advance in the automatic indexing of the biomedical literature. J. Biomed. Informatics 42 (5) (2009)
Aurélie Névéol, Thomas Martin Deserno, Stéfan Jacques Darmoni, Mark Oliver Güld, Alan R. Aronson
Natural language processing versus content-based image analysis for medical document retrieval. J. Assoc. Inf. Sci. Technol. 60 (1) (2009)
Miguel E. Ruiz, Alan R. Aronson, Marjorie M. K. Hlava
Adoption and evaluation issues of automatic and computer aided indexing systems. ASIST (2008)
Alan R. Aronson, James G. Mork, Aurélie Névéol, Sonya E. Shooshan, Dina Demner-Fushman
Methodology for Creating UMLS Content Views Appropriate for Biomedical Natural Language Processing. AMIA (2008)
Patrick Ruch, Antoine Geissbühler, Julien Gobeill, Frédéric Lisacek, Imad Tbahriti, Anne-Lise Veuthey, Alan R. Aronson
Using Discourse Analysis to Improve Text Categorization in MEDLINE. MedInfo (2007)
Aurélie Névéol, Sonya E. Shooshan, Susanne M. Humphrey, Thomas C. Rindflesch, Alan R. Aronson
Multiple Approaches to Fine-Grained Indexing of the Biomedical Literature. Pacific Symposium on Biocomputing (2007)
Kin Wah Fung, Olivier Bodenreider, Alan R. Aronson, William T. Hole, Suresh Srinivasan
Combining Lexical and Semantic Methods of Inter-terminology Mapping Using the UMLS. MedInfo (2007)
Aurélie Névéol, James G. Mork, Alan R. Aronson
Automatic Indexing of Specialized Documents: Using Generic vs. Domain-Specific Document Representations. BioNLP@ACL (2007)
Alan R. Aronson, Olivier Bodenreider, Dina Demner-Fushman, Kin Wah Fung, Vivian K. Lee, James G. Mork, Aurélie Névéol, Lee B. Peters, Willie J. Rogers
From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches. BioNLP@ACL (2007)
Dina Demner-Fushman, Susanne M. Humphrey, Nicholas C. Ide, Russell F. Loane, James G. Mork, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, W. John Wilbur, Alan R. Aronson
Combining Resources to Find Answers to Biomedical Questions. TREC (2007)
Aurélie Névéol, Sonya E. Shooshan, James G. Mork, Alan R. Aronson
Fine-Grained Indexing of the Biomedical Literature: MeSH Subheading Attachment for a MEDLINE Indexing Tool. AMIA (2007)
Patrick Ruch, Imad Tbahriti, Julien Gobeill, Alan R. Aronson
Argumentative Feedback: A Linguistically-Motivated Term Expansion for Information Retrieval. ACL (2006)
Dina Demner-Fushman, Susanne M. Humphrey, Nicholas C. Ide, Russell F. Loane, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Alan R. Aronson
Finding Relevant Passages in Scientific Articles: Fusion of Automatic Approaches vs. an Interactive Team Effort. TREC (2006)
Clifford W. Gay, Mehmet Kayaalp, Alan R. Aronson
Semi-Automatic Indexing of Full Text Biomedical Articles. AMIA (2005)
Alan R. Aronson, Dina Demner-Fushman, Susanne M. Humphrey, Jimmy Lin, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Hongfang Liu
Fusion of Knowledge-Intensive and Statistical Approaches for Retrieving and Annotating Textual Genomics Documents. TREC (2005)
Aurélie Névéol, James G. Mork, Alan R. Aronson, Stéfan Jacques Darmoni
Evaluation of French and English MeSH Indexing Systems with a Parallel Corpus. AMIA (2005)
Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Won Kim, Russell F. Loane, James G. Mork, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Natalie Xie, Dina Demner-Fushman, Hongfang Liu
Knowledge-Intensive and Statistical Approaches to the Retrieval and Annotation of Genomics MEDLINE Citations. TREC (2004)
George R. Kim, Alan R. Aronson, James G. Mork, Bernard A. Cohen, Christoph U. Lehmann
Application of a Medical Text Indexer to an Online Dermatology Atlas. MedInfo (2004)
Alan R. Aronson, James G. Mork, Clifford W. Gay, Susanne M. Humphrey, Willie J. Rogers
The NLM Indexing Initiative's Medical Text Indexer. MedInfo (2004)
Mehmet Kayaalp, Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Lorraine K. Tanabe, Lawrence H. Smith, Dina Demner-Fushman, Russell F. Loane, James G. Mork, Olivier Bodenreider
Methods for Accurate Retrieval of MEDLINE Citations in Functional Genomics. TREC (2003)
Joyce A. Mitchell, Alan R. Aronson, James G. Mork, Lillian C. Folk, Susanne M. Humphrey, Janice M. Ward
Gene Indexing: Characterization and Analysis of NLM's GeneRIFs. AMIA (2003)
Patricia Flatley Brennan, Alan R. Aronson
Towards linking patients and clinical information: detecting UMLS concepts in e-mail. J. Biomed. Informatics 36 (4-5) (2003)
Marc Weeber, Rein Vos, Henny Klein, Lolkje T. W. de Jong-van den Berg, Alan R. Aronson, Grietje Molema
Case Report: Generating Hypotheses by Discovering Implicit Associations in the Literature: A Case Report of a Search for New Potential Therapeutic Uses for Thalidomide. J. Am. Medical Informatics Assoc. 10 (3) (2003)
Allen C. Browne, Guy Divita, Alan R. Aronson, Alexa T. McCray
UMLS Language and Vocabulary Tools: AMIA 2003 Open Source Expo. AMIA (2003)
Thomas C. Rindflesch, Bisharah Libbus, Dimitar Hristovski, Alan R. Aronson, Halil Kilicoglu
Semantic Relations Asserting the Etiology of Genetic Diseases. AMIA (2003)
Hongfang Liu, Alan R. Aronson, Carol Friedman
A study of abbreviations in MEDLINE abstracts. AMIA (2002)
Suresh Srinivasan, Thomas C. Rindflesch, William T. Hole, Alan R. Aronson, James G. Mork
Finding UMLS Metathesaurus concepts in MEDLINE. AMIA (2002)
Len Y. Tanaka, Alan R. Aronson, Marc Weeber
Mining the Epidemiological Literature for Risk Factors and Incidence Data of Kawasaki Disease. AMIA (2002)
Marc Weeber, James G. Mork, Alan R. Aronson
Developing a test collection for biomedical word sense disambiguation. AMIA (2001)
Won Kim, Alan R. Aronson, W. John Wilbur
Automatic MeSH term assignment and quality assessment. AMIA (2001)
Alan R. Aronson
Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program. AMIA (2001)
Marc Weeber, Henny Klein, Alan R. Aronson, James G. Mork, Lolkje T. W. de Jong-van den Berg, Rein Vos
Text-based discovery in biomedicine: the architecture of the DAD-system. AMIA (2000)
Alan R. Aronson, Olivier Bodenreider, Florence Chang, Susanne M. Humphrey, James G. Mork, Stuart J. Nelson, Thomas C. Rindflesch, W. John Wilbur
The NLM Indexing Initiative. AMIA (2000)
Stuart J. Nelson, Alan R. Aronson, Tamas E. Doszkocs, W. John Wilbur, Olivier Bodenreider, H. Florence Chang, James G. Mork, Alexa T. McCray
Automated Assignment of Medical Subject Headings. AMIA (1999)
Thomas C. Rindflesch, Lawrence Hunter, Alan R. Aronson
Mining molecular binding terminology from biomedical text. AMIA (1999)
Carol A. Bean, C. R. Selden, Thomas C. Rindflesch, Alan R. Aronson
From Bibliography to Test Collection: Enhancing Topical Relevance Assessment for Bibliographic Information Retrieval System Evaluation. AMIA (1999)
Lawrence W. Wright, Holly K. Grossetta Nardini, Alan R. Aronson, Thomas C. Rindflesch
Hierarchical Concept Indexing of Full-Text Documents in the Unified Medical Language System® Information Sources Map. J. Am. Soc. Inf. Sci. 50 (6) (1999)
W. John Wilbur, George F. Hazard Jr., Guy Divita, James G. Mork, Alan R. Aronson, Allen C. Browne
Analysis of biomedical text for chemical names: a comparison of three methods. AMIA (1999)
Alan R. Aronson, Thomas C. Rindflesch
Query expansion using the UMLS Metathesaurus. AMIA (1997)
Alan R. Aronson
Exploiting a Large Thesaurus for Information Retrieval. RIAO (1994)
Barry E. Jacobs, Alan R. Aronson, Anthony C. Klug
On Interpretations of Relational Languages and Solutions to the Implied Constraint Problem. ACM Trans. Database Syst. 7 (2) (1982)
Alan R. Aronson, Barry E. Jacobs, Jack Minker
A Note on Fuzzy Deduction. J. ACM 27 (4) (1980)
Craig M. Cook, Azriel Rosenfeld, Alan R. Aronson
Grammatical inference by hill climbing. Inf. Sci. 10 (1) (1976)