Won Kim

Publication Activity (10 Years)

Years Active: 2000-2023
Publications (10 Years): 12

Top Topics

Scientific Literature

Biomedical Information Retrieval

Relative Importance

Top Venues

Publications

Qiao Jin, Won Kim, Qingyu Chen, Donald C. Comeau, Lana Yeganova, W. John Wilbur, Zhiyong Lu
BioCPT: Contrastive Pre-trained Transformers with Large-scale PubMed Search Logs for Zero-shot Biomedical Information Retrieval. CoRR (2023)
Shubo Tian, Qiao Jin, Lana Yeganova, Po-Ting Lai, Qingqing Zhu, Xiuying Chen, Yifan Yang, Qingyu Chen, Won Kim, Donald C. Comeau, Rezarta Islamaj, Aadit Kapoor, Xin Gao, Zhiyong Lu
Opportunities and Challenges for ChatGPT and Large Language Models in Biomedicine and Health. CoRR (2023)
Qiao Jin, Won Kim, Qingyu Chen, Donald C. Comeau, Lana Yeganova, W. John Wilbur, Zhiyong Lu
MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed search logs for zero-shot biomedical information retrieval. Bioinform. 39 (10) (2023)
Won Kim, Lana Yeganova, Donald C. Comeau, W. John Wilbur, Zhiyong Lu
Towards a unified search: Improving PubMed retrieval with full text. J. Biomed. Informatics 134 (2022)
Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur, Zhiyong Lu
Measuring the relative importance of full text sections for information retrieval from scientific literature. BioNLP@NAACL-HLT (2021)
Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur, Zhiyong Lu
Improving PubMed Retrieval by Integrating Abstract and Full Text Search. AMIA (2021)
Lana Yeganova, Rezarta Islamaj Dogan, Qingyu Chen, Robert Leaman, Alexis Allot, Chih-Hsuan Wei, Donald C. Comeau, Won Kim, Yifan Peng, W. John Wilbur, Zhiyong Lu
Navigating the landscape of COVID-19 research through literature analysis: A bird's eye view. CoRR (2020)
Rezarta Islamaj Dogan, Lana Yeganova, Won Kim, Natalie Xie, W. John Wilbur
PDC - a probabilistic distributional clustering algorithm: a case study on suicide articles in PubMed. CoRR (2019)
Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur, Zhiyong Lu
A Field Sensor: computing the composition and intent of PubMed queries. Database J. Biol. Databases Curation 2018 (2018)
Won Kim, Lana Yeganova, Donald C. Comeau, W. John Wilbur, Zhiyong Lu
MeSH-based dataset for measuring the relevance of text retrieval. BioNLP (2018)
Lana Yeganova, Donald C. Comeau, Won Kim, W. John Wilbur, Zhiyong Lu
SingleCite: Towards an improved Single Citation Search in PubMed. BioNLP (2018)
Lana Yeganova, Won Kim, Sun Kim, Rezarta Islamaj Dogan, Wanli Liu, Donald C. Comeau, Zhiyong Lu, W. John Wilbur
PubTermVariants: biomedical term variants and their use for PubMed search. BioNLP@ACL (2016)
Lana Yeganova, Won Kim, Sun Kim, W. John Wilbur
Retro: concept-based clustering of biomedical topical sets. Bioinform. 30 (22) (2014)
Wanli Liu, Rezarta Islamaj Dogan, Sun Kim, Donald C. Comeau, Won Kim, Lana Yeganova, Zhiyong Lu, W. John Wilbur
Author name disambiguation for PubMed. J. Assoc. Inf. Sci. Technol. 65 (4) (2014)
W. John Wilbur, Won Kim
Stochastic Gradient Descent and the Prediction of MeSH for PubMed Records. AMIA (2014)
Won Kim, Lana Yeganova, Donald C. Comeau, W. John Wilbur
Identifying well-formed biomedical phrases in MEDLINE® text. J. Biomed. Informatics 45 (6) (2012)
Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur
. J. Biomed. Semant. 3 (S-3) (2012)
Lana Yeganova, Vahan Grigoryan, Won Kim, W. John Wilbur
Automatic Identification of Key Concepts in Large PubMed Retrievals. AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text (2012)
Sun Kim, Won Kim, Chih-Hsuan Wei, Zhiyong Lu, W. John Wilbur
Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information. Database J. Biol. Databases Curation 2012 (2012)
Larry H. Smith, Won Kim, W. John Wilbur
PROBE: Periodic Random Orbiter Algorithm for Machine Learning. AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text (2012)
Sun Kim, Won Kim, Donald C. Comeau, W. John Wilbur
Classifying Gene Sentences in Biomedical Literature by Combining High-Precision Gene Identifiers. BioNLP@HLT-NAACL (2012)
W. John Wilbur, Won Kim
Improving a gold standard: treating human relevance judgments of MEDLINE document pairs. BMC Bioinform. 12 (S-3) (2011)
Lana Yeganova, Donald C. Comeau, Won Kim, W. John Wilbur
Text Mining Techniques for Leveraging Positively Labeled Data. BioNLP@ACL (2011)
Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur
Comparison of Two Methods for Finding Biomedical Categories in Medline. ICMLA (2) (2011)
Won Kim, W. John Wilbur
Improving a Gold Standard: Treating Human Relevance Judgments of MEDLINE Document Pairs. ICMLA (2010)
Zhiyong Lu, Won Kim, W. John Wilbur
Viewpoint Paper: Evaluating Relevance Ranking Strategies for MEDLINE Retrieval. J. Am. Medical Informatics Assoc. 16 (1) (2009)
Lana Yeganova, Donald C. Comeau, Won Kim, W. John Wilbur
How to interpret PubMed queries and why it matters. J. Assoc. Inf. Sci. Technol. 60 (2) (2009)
Zhiyong Lu, Won Kim, W. John Wilbur
Evaluation of query expansion using MeSH in PubMed. Inf. Retr. 12 (1) (2009)
Aurélie Névéol, Won Kim, W. John Wilbur, Zhiyong Lu
Exploring Two Biomedical Text Genres for Disease Recognition. BioNLP@HLT-NAACL (2009)
W. John Wilbur, Won Kim
The ineffectiveness of within-document term frequency in text classification. Inf. Retr. 12 (5) (2009)
Sunghwan Sohn, Won Kim, Donald C. Comeau, W. John Wilbur
Assignment. J. Am. Medical Informatics Assoc. 15 (4) (2008)
Zhiyong Lu, Won Kim, W. John Wilbur
Evaluating Relevance Ranking Strategies for MEDLINE Retrieval. AMIA (2008)
Sunghwan Sohn, Donald C. Comeau, Won Kim, W. John Wilbur
Abbreviation definition identification based on automatic precision estimates. BMC Bioinform. 9 (2008)
Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W. John Wilbur
Using MEDLINE as a knowledge source for disambiguating abbreviations and acronyms in full-text biomedical journal articles. J. Biomed. Informatics 40 (2) (2007)
W. John Wilbur, Won Kim, Natalie Xie
Spelling correction in the PubMed search engine. Inf. Retr. 9 (5) (2006)
Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W. John Wilbur
A large scale, corpus-based approach for automatically disambiguating biomedical abbreviations. ACM Trans. Inf. Syst. 24 (3) (2006)
Won Kim, W. John Wilbur
A Strategy for Assigning New Concepts in the MEDLINE Database. AMIA (2005)
W. John Wilbur, Lana Yeganova, Won Kim
The Synergy Between PAV and AdaBoost. Mach. Learn. 61 (1-3) (2005)
Hong Yu, Won Kim, Vasileios Hatzivassiloglou, W. John Wilbur
Using MEDLINE as a Knowledge Source for Disambiguating Abbreviations in Full-Text Biomedical Journal Articles. CBMS (2004)
Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Won Kim, Russell F. Loane, James G. Mork, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Natalie Xie, Dina Demner-Fushman, Hongfang Liu
Knowledge-Intensive and Statistical Approaches to the Retrieval and Annotation of Genomics MEDLINE Citations. TREC (2004)
W. John Wilbur, Won Kim
The Dimensions of Indexing. AMIA (2003)
Won Kim, W. John Wilbur
DNA splice site detection: a comparison of specific and general methods. AMIA (2002)
Won Kim, Alan R. Aronson, W. John Wilbur
Automatic MeSH term assignment and quality assessment. AMIA (2001)
Won Kim, W. John Wilbur
Corpus-based statistical screening for content-bearing terms. J. Assoc. Inf. Sci. Technol. 52 (3) (2001)
Won Kim, W. John Wilbur
Amino Acid Residue Environments and Predictions of Residue Type. Comput. Chem. 25 (4) (2001)
Won Kim, W. John Wilbur
Research Paper: Corpus-based Statistical Screening for Phrase Identification. J. Am. Medical Informatics Assoc. 7 (5) (2000)