James G. Mork

Publication Activity (10 Years)

Years Active: 1999-2023
Publications (10 Years): 18

Top Topics

National Library Of Medicine

Top Venues

J. Am. Medical Informatics Assoc.

CLEF (Working Notes)

Publications

Anastasia Krithara, James G. Mork, Anastasios Nentidis, Georgios Paliouras
The road from manual to automatic semantic indexing of biomedical literature: a 10 years journey. Frontiers Res. Metrics Anal. 8 (2023)
Alastair R. Rae, James G. Mork, Dina Demner-Fushman
The National Library of Medicine indexer assignment dataset: A new large-scale dataset for reviewer assignment research. J. Assoc. Inf. Sci. Technol. 74 (2) (2023)
Daniel X. Le, James G. Mork, Sameer Antani
Hybrid Ensemble-Rule Algorithm for Improved MEDLINE® Sentence Boundary Detection. AMIA (2021)
Victor Cid, James G. Mork
Using Deep Neural Network Binary Classifiers to Infer MeSH Publication Types. AMIA (2021)
Dina Demner-Fushman, Willie J. Rogers, James G. Mork
Automatic recognition of figurative language in biomedical articles. SDU@AAAI (2021)
Chris J. Lu, Amanda Payne, James G. Mork
Identifying Criteria for Antonym Generation from Collocates in Corpora. AMIA (2021)
Alastair R. Rae, James G. Mork, Dina Demner-Fushman
A Neural Text Ranking Approach for Automatic MeSH Indexing. CLEF (Working Notes) (2021)
Chris J. Lu, Amanda Payne, James G. Mork
Proper filter usage to retrieve multiwords from the MEDLINE n-gram set: Reply to the Turki et al commentary "Enhancing filter-based parenthetic abbreviation extraction methods". J. Am. Medical Informatics Assoc. 28 (3) (2021)
Chris J. Lu, Amanda Payne, James G. Mork
Enhanced Features in the SPECIALIST Lexicon - Antonyms. AMIA (2020)
Chris J. Lu, Amanda Payne, James G. Mork
The Unified Medical Language System SPECIALIST Lexicon and Lexical Tools: Development and applications. J. Am. Medical Informatics Assoc. 27 (10) (2020)
Alastair R. Rae, David O. Pritchard, James G. Mork, Dina Demner-Fushman
Automatic MeSH Indexing: Revisiting the Subheading Attachment Problem. AMIA (2020)
Max E. Savery, Melanie Huston, James G. Mork, Olga Printseva, Susan Schmidt, Alastair R. Rae, Dina Demner-Fushman
Evaluation of System for Selective Indexing Classification. AMIA (2019)
Alastair R. Rae, James G. Mork, Dina Demner-Fushman
Convolutional Neural Network for Automatic MeSH Indexing. PKDD/ECML Workshops (2) (2019)
Alastair R. Rae, Max E. Savery, James G. Mork, Dina Demner-Fushman
A High Recall Classifier for Selecting Articles for MEDLINE Indexing. AMIA (2019)
Dina Demner-Fushman, James G. Mork, Willie J. Rogers, Sonya E. Shooshan, Laritza M. Rodriguez, Alan R. Aronson
Finding medication doses in the literature. AMIA (2018)
François-Michel Lang, James G. Mork, Dina Demner-Fushman, Alan R. Aronson
Increasing UMLS Coverage and Reducing Ambiguity via Automated Creation of Synonymous Terms. AMIA (2018)
James G. Mork, Alan R. Aronson, Dina Demner-Fushman
12 years on - Is the NLM medical text indexer still useful and relevant? J. Biomed. Semant. 8 (1) (2017)
James G. Mork, Dina Demner-Fushman
Resolving Hierarchical Ambiguity in Indexing Recommendations. AMIA (2016)
Dina Demner-Fushman, James G. Mork
Extracting Characteristics of the Study Subjects from Full-Text Articles. AMIA (2015)
Antonio Jimeno-Yepes, Laura Plaza, Jorge Carrillo de Albornoz, James G. Mork, Alan R. Aronson
Feature engineering for MEDLINE citation categorization with MeSH. BMC Bioinform. 16 (2015)
James G. Mork, Dina Demner-Fushman, Susan Schmidt, Alan R. Aronson
Recent Enhancements to the NLM Medical Text Indexer. CLEF (Working Notes) (2014)
James G. Mork, Dina Demner-Fushman, Susan Schmidt, Alan R. Aronson
Vocabulary Density Method for Customized Indexing of MEDLINE Journals. AMIA (2014)
Antonio Jimeno-Yepes, James G. Mork, Dina Demner-Fushman, Alan R. Aronson
Comparison and combination of several MeSH indexing approaches. AMIA (2013)
Antonio Jimeno-Yepes, James G. Mork, Alan R. Aronson
Identifying Publication Types Using Machine Learning. BioASQ@CLEF (2013)
Antonio José Jimeno-Yepes, Laura Plaza, James G. Mork, Alan R. Aronson, Alberto Díaz
MeSH indexing based on automatically generated summaries. BMC Bioinform. 14 (2013)
Antonio Jimeno-Yepes, J. Caitlin Sticco, James G. Mork, Alan R. Aronson
GeneRIF indexing: sentence selection based on machine learning. BMC Bioinform. 14 (2013)
Dina Demner-Fushman, James G. Mork, Alan R. Aronson
Mining MEDLINE for problems associated with vitamin D. AMIA (2013)
Antonio Jimeno-Yepes, James G. Mork, Alan R. Aronson
Using the Argumentative Structure of Scientific Literature to Improve Information Access. BioNLP@ACL (2013)
James G. Mork, Antonio Jimeno-Yepes, Alan R. Aronson
The NLM Medical Text Indexer System for Indexing Biomedical Literature. BioASQ@CLEF (2013)
Antonio Jimeno-Yepes, James G. Mork, Bartlomiej Wilkowski, Dina Demner-Fushman, Alan R. Aronson
MEDLINE MeSH indexing: lessons learned from machine learning and future directions. IHI (2012)
Dina Demner-Fushman, Swapna Abhyankar, Antonio Jimeno-Yepes, Russell F. Loane, François-Michel Lang, James G. Mork, Nicolas Ide, Alan R. Aronson
NLM at TREC 2012 Medical Records Track. TREC (2012)
Anna Ripple, Lou Knecht, John Rozier, James G. Mork
Structured Abstracts in MEDLINE: Implementation Based on a Retrospective Cohort Study. AMIA (2012)
Antonio Jimeno-Yepes, James G. Mork, Dina Demner-Fushman, Alan R. Aronson
A One-Size-Fits-All Indexing Method Does Not Exist: Automatic Selection Based on Meta-Learning. J. Comput. Sci. Eng. 6 (2) (2012)
James G. Mork, Olivier Bodenreider, Dina Demner-Fushman, Rezarta Islamaj Dogan, François-Michel Lang, Zhiyong Lu, Aurélie Névéol, Lee B. Peters, Sonya E. Shooshan, Alan R. Aronson
Extracting Rx information from clinical narrative. J. Am. Medical Informatics Assoc. 17 (5) (2010)
Dina Demner-Fushman, James G. Mork, Sonya E. Shooshan, Alan R. Aronson
UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text. J. Biomed. Informatics 43 (4) (2010)
Aurélie Névéol, James G. Mork, Alan R. Aronson
Comment on 'MeSH-up: effective MeSH text classification for improved document retrieval'. Bioinform. 25 (20) (2009)
Aurélie Névéol, Sonya E. Shooshan, Susanne M. Humphrey, James G. Mork, Alan R. Aronson
A recent advance in the automatic indexing of the biomedical literature. J. Biomed. Informatics 42 (5) (2009)
Alan R. Aronson, James G. Mork, Aurélie Névéol, Sonya E. Shooshan, Dina Demner-Fushman
Methodology for Creating UMLS Content Views Appropriate for Biomedical Natural Language Processing. AMIA (2008)
Aurélie Névéol, James G. Mork, Alan R. Aronson
Automatic Indexing of Specialized Documents: Using Generic vs. Domain-Specific Document Representations. BioNLP@ACL (2007)
Alan R. Aronson, Olivier Bodenreider, Dina Demner-Fushman, Kin Wah Fung, Vivian K. Lee, James G. Mork, Aurélie Névéol, Lee B. Peters, Willie J. Rogers
From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches. BioNLP@ACL (2007)
Dina Demner-Fushman, Susanne M. Humphrey, Nicholas C. Ide, Russell F. Loane, James G. Mork, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, W. John Wilbur, Alan R. Aronson
Combining Resources to Find Answers to Biomedical Questions. TREC (2007)
Aurélie Névéol, Sonya E. Shooshan, James G. Mork, Alan R. Aronson
Fine-Grained Indexing of the Biomedical Literature: MeSH Subheading Attachment for a MEDLINE Indexing Tool. AMIA (2007)
Aurélie Névéol, James G. Mork, Alan R. Aronson, Stéfan Jacques Darmoni
Evaluation of French and English MeSH Indexing Systems with a Parallel Corpus. AMIA (2005)
Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Won Kim, Russell F. Loane, James G. Mork, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Natalie Xie, Dina Demner-Fushman, Hongfang Liu
Knowledge-Intensive and Statistical Approaches to the Retrieval and Annotation of Genomics MEDLINE Citations. TREC (2004)
George R. Kim, Alan R. Aronson, James G. Mork, Bernard A. Cohen, Christoph U. Lehmann
Application of a Medical Text Indexer to an Online Dermatology Atlas. MedInfo (2004)
Alan R. Aronson, James G. Mork, Clifford W. Gay, Susanne M. Humphrey, Willie J. Rogers
The NLM Indexing Initiative's Medical Text Indexer. MedInfo (2004)
Mehmet Kayaalp, Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Lorraine K. Tanabe, Lawrence H. Smith, Dina Demner-Fushman, Russell F. Loane, James G. Mork, Olivier Bodenreider
Methods for Accurate Retrieval of MEDLINE Citations in Functional Genomics. TREC (2003)
Joyce A. Mitchell, Alan R. Aronson, James G. Mork, Lillian C. Folk, Susanne M. Humphrey, Janice M. Ward
Gene Indexing: Characterization and Analysis of NLM's GeneRIFs. AMIA (2003)
Suresh Srinivasan, Thomas C. Rindflesch, William T. Hole, Alan R. Aronson, James G. Mork
Finding UMLS Metathesaurus concepts in MEDLINE. AMIA (2002)
Marc Weeber, James G. Mork, Alan R. Aronson
Developing a test collection for biomedical word sense disambiguation. AMIA (2001)
Marc Weeber, Henny Klein, Alan R. Aronson, James G. Mork, Lolkje T. W. de Jong-van den Berg, Rein Vos
Text-based discovery in biomedicine: the architecture of the DAD-system. AMIA (2000)
Alan R. Aronson, Olivier Bodenreider, Florence Chang, Susanne M. Humphrey, James G. Mork, Stuart J. Nelson, Thomas C. Rindflesch, W. John Wilbur
The NLM Indexing Initiative. AMIA (2000)
Stuart J. Nelson, Alan R. Aronson, Tamas E. Doszkocs, W. John Wilbur, Olivier Bodenreider, H. Florence Chang, James G. Mork, Alexa T. McCray
Automated Assignment of Medical Subject Headings. AMIA (1999)
W. John Wilbur, George F. Hazard Jr., Guy Divita, James G. Mork, Alan R. Aronson, Allen C. Browne
Analysis of biomedical text for chemical names: a comparison of three methods. AMIA (1999)