Paul N. Schofield

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 18

Top Topics

Biomedical Ontologies

Top Venues

J. Biomed. Semant.

Publications

Luke T. Slater, John A. Williams, Paul N. Schofield, Sophie Russell, Samantha C. Pendleton, Andreas Karwath, Hilary Fanning, Simon Ball, Robert Hoehndorf, Georgios V. Gkoutos
Klarigi: Characteristic explanations for semantic biomedical data. Comput. Biol. Medicine 153 (2023)
Núria Queralt-Rosinach, Paul N. Schofield, Marco Roos, Robert Hoehndorf
Updating the CEMO ontology for future epidemiological challenges. SWAT4HCLS (2023)
Luke T. Slater, John A. Williams, Andreas Karwath, Hilary Fanning, Simon Ball, Paul N. Schofield, Robert Hoehndorf, Georgios V. Gkoutos
Multi-faceted semantic clustering with text-derived phenotypes. Comput. Biol. Medicine 138 (2021)
Núria Queralt-Rosinach, Mark D. Wilkinson, Rajaram Kaliyaperumal, César Bernabé, Qinqin Long, Michel Dumontier, Paul N. Schofield, Marco Roos
Reuse of Design Pattern Measurements for Health Data. JOWO (2021)
Senay Kafkas, Sara Althubaiti, Georgios V. Gkoutos, Robert Hoehndorf, Paul N. Schofield
Linking common human diseases to their phenotypes; development of a resource for human phenomics. J. Biomed. Semant. 12 (1) (2021)
Luke T. Slater, John A. Williams, Paul N. Schofield, Georgios V. Gkoutos
Exploring Sentiment as a Potential Indicator of Bias in Disease Ontologies. BIBM (2021)
Imane Boudellioua, Maxat Kulmanov, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf
DeepPVP: phenotype-based prioritization of causative variants using deep learning. BMC Bioinform. 20 (1) (2019)
Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
The anatomy of phenotype ontologies: principles, properties and applications. Briefings Bioinform. 19 (5) (2018)
Balázs G. Madas, Paul N. Schofield
Survey on data management in radiation protection research. CoRR (2018)
Maxat Kulmanov, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf
Ontology-based validation and identification of regulatory phenotypes. Bioinform. 34 (17) (2018)
Miguel Ángel Rodríguez-García, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
Integrating phenotype ontologies with PhenomeNET. J. Biomed. Semant. 8 (1) (2017)
Imane Boudellioua, Rozaimi B. Mahamad Razali, Maxat Kulmanov, Yasmeen Hashish, Vladimir B. Bajic, Eva Goncalves-Serra, Nadia Schoenmakers, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
Semantic prioritization of novel causative genomic variants. PLoS Comput. Biol. 13 (4) (2017)
Miguel Ángel Rodríguez-García, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
Integrating phenotype ontologies with PhenomeNET. OM@ISWC (2016)
Miguel Ángel Rodríguez-García, Luke T. Slater, Imane Boudellioua, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf
Updates to the AberOWL Ontology Repository. ICBO/BioCreative (2016)
Hannah M. Fisher, Robert Hoehndorf, Bruno S. Bazelato, Soheil S. Dadras, Lloyd E. King, Georgios V. Gkoutos, John P. Sundberg, Paul N. Schofield
DermO; an ontology for the description of dermatologic disease. J. Biomed. Semant. 7 (2016)
Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
To MIREOT or not to MIREOT? A Case Study of the Impact of Using MIREOT in the Experimental Factor Ontology (EFO). ICBO/BioCreative (2016)
Robert Hoehndorf, Liam Mencel, Georgios V. Gkoutos, Paul N. Schofield
Large-Scale Reasoning over Functions in Biomedical Ontologies. FOIS (2016)
Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
Using AberOWL for fast and scalable reasoning over BioPortal ontologies. J. Biomed. Semant. 7 (2016)
Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
Using Aber-OWL for fast and scalable reasoning over BioPortal ontologies. ICBO (2015)
Miguel Ángel Rodríguez-García, Luke T. Slater, Keiron O'Shea, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf
Visualising Ontologies with AberOWL. SWAT4LS (2015)
Robert Hoehndorf, Michael Gruenberger, Georgios V. Gkoutos, Paul N. Schofield
Similarity-based search of model organism, disease and drug effect phenotypes. J. Biomed. Semant. 6 (2015)
Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos
Aber-OWL: a framework for ontology-based data access in biology. BMC Bioinform. 16 (2015)
Luke T. Slater, Miguel Ángel Rodríguez-García, Keiron O'Shea, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf
Experiences with Aber-OWL, an Ontology Repository with OWL EL Reasoning. OWLED (2015)
Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
AberOWL: an ontology portal with OWL EL reasoning. ICBO (2015)
Robert Hoehndorf, Paul N. Schofield, Georgios V. Gkoutos
The role of ontologies in biological and biomedical research: a functional perspective. Briefings Bioinform. 16 (6) (2015)
Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos
Aber-OWL: a framework for ontology-based data access in biology. CoRR (2014)
Robert Hoehndorf, Tanya Hiebert, Nigel W. Hardy, Paul N. Schofield, Georgios V. Gkoutos, Michel Dumontier
Mouse model phenotypes provide information about human drug targets. Bioinform. 30 (5) (2014)
Sebastian Köhler, Sandra C. Doelken, Christopher J. Mungall, Sebastian Bauer, Helen V. Firth, Isabelle Bailleul-Forestier, Graeme C. M. Black, Danielle L. Brown, Michael Brudno, Jennifer Campbell, David R. FitzPatrick, Janan T. Eppig, Andrew P. Jackson, Kathleen Freson, Marta Gîrdea, Ingo Helbig, Jane A. Hurst, Johanna Jähn, Laird G. Jackson, Anne M. Kelly, David H. Ledbetter, Sahar Mansour, Christa L. Martin, Celia Moss, Andrew D. Mumford, Willem H. Ouwehand, Soo-Mi Park, Erin Rooney Riggs, Richard H. Scott, Sanjay Sisodiya, Steven Van Vooren, Ronald J. Wapner, Andrew O. M. Wilkie, Caroline F. Wright, Anneke T. Vulto-van Silfhout, Nicole de Leeuw, Bert B. A. de Vries, Nicole L. Washington, Cynthia L. Smith, Monte Westerfield, Paul N. Schofield, Barbara J. Ruef, Georgios V. Gkoutos, Melissa A. Haendel, Damian Smedley, Suzanna E. Lewis, Peter N. Robinson
The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data. Nucleic Acids Res. 42 (Database-Issue) (2014)
Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos
Aber-OWL: A Framework for Ontology-based Data Access in Biology. SWAT4LS (2014)
Paul N. Schofield, John P. Sundberg, Beth A. Sundberg, Colin McKerlie, Georgios V. Gkoutos
The mouse pathology ontology, MPATH; structure and applications. J. Biomed. Semant. 4 (2013)
Robert Hoehndorf, Anika Oellrich, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos
Linking PharmGKB to Phenotype Studies and Animal Models of Disease for Drug Repurposing. Pacific Symposium on Biocomputing (2012)
Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf
The Units Ontology: a tool for integrating units of measurement in science. Database J. Biol. Databases Curation 2012 (2012)
Pascale Gaudet, Cecilia N. Arighi, Frederic B. Bastian, Alex Bateman, Judith A. Blake, J. Michael Cherry, Peter D'Eustachio, Robert D. Finn, Michelle G. Giglio, Lynette Hirschman, Renate Kania, William Klimke, Maria Jesus Martin, Ilene Karsch-Mizrachi, Monica C. Munoz-Torres, Darren A. Natale, Claire O'Donovan, B. F. Francis Ouellette, Kim D. Pruitt, Marc Robinson-Rechavi, Susanna-Assunta Sansone, Paul N. Schofield, Granger G. Sutton, Kimberly Van Auken, Sona Vasudevan, Cathy H. Wu, Jasmine Young, Raja Mazumder
Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference. Database J. Biol. Databases Curation 2012 (2012)
Ravensara S. Travillian, James Malone, Chao Pang, John M. Hancock, Peter W. H. Holland, Paul N. Schofield, Helen E. Parkinson
The Vertebrate Bridging Ontology (VBO). ICBO (2011)
Sebastian Köhler, Sebastian Bauer, Chris Mungall, Gabriele Carletti, Cynthia L. Smith, Paul N. Schofield, Georgios V. Gkoutos, Peter N. Robinson
Improving ontologies by automatic reasoning and evaluation of logical definitions. BMC Bioinform. 12 (2011)
Ravensara S. Travillian, Tomasz Adamusiak, Tony Burdett, Michael Gruenberger, John M. Hancock, Ann-Marie Mallon, James Malone, Paul N. Schofield, Helen E. Parkinson
Anatomy ontologies and potential users: bridging the gap. J. Biomed. Semant. 2 (S-4) (2011)
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
Towards BioDBcore: a community-defined information specification for biological databases. Database J. Biol. Databases Curation 2011 (2011)
Robert Hoehndorf, Michel Dumontier, Anika Oellrich, Sarala M. Wimalaratne, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos
A common layer of interoperability for biomedical ontologies based on OWL EL. Bioinform. 27 (7) (2011)
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res. 39 (Database-Issue) (2011)
Damian Smedley, Paul N. Schofield, Chao-Kung Chen, Vassilis Aidinis, Crysanthi Ainali, Jonathan B. L. Bard, Rudi Balling, Ewan Birney, Andrew Blake, Erik Bongcam-Rudloff, Anthony J. Brookes, Gianni Cesareni, Christina Chandras, Janan T. Eppig, Paul Flicek, Georgios V. Gkoutos, Simon Greenaway, Michael Gruenberger, Jean-Karim Hériché, Andrew Lyall, Ann-Marie Mallon, Dawn Muddyman, Florian Reisinger, Martin Ringwald, Nadia A. Rosenthal, Klaus Schughart, Morris A. Swertz, Gudmundur A. Thorisson, Michael Zouberakis, John M. Hancock
Finding and sharing: new approaches to registries of databases and services for the biomedical sciences. Database J. Biol. Databases Curation 2010 (2010)
Michael Zouberakis, Christina Chandras, Morris A. Swertz, Damian Smedley, Michael Gruenberger, Jonathan B. L. Bard, Klaus Schughart, Nadia A. Rosenthal, John M. Hancock, Paul N. Schofield, George Kollias, Vassilis Aidinis
Mouse Resource Browser - a database of mouse databases. Database J. Biol. Databases Curation 2010 (2010)
Christina Chandras, Thomas Weaver, Michael Zouberakis, Damian Smedley, Klaus Schughart, Nadia A. Rosenthal, John M. Hancock, George Kollias, Paul N. Schofield, Vassilis Aidinis
Models for financial sustainability of biological databases and resources. Database J. Biol. Databases Curation 2009 (2009)
Michael Zouberakis, Christina Chandras, John M. Hancock, Paul N. Schofield, Vassilis Aidinis
The Mouse Resource Browser (MRB) - A near-complete registry of mouse resources. BIBE (2008)
John M. Hancock, Paul N. Schofield, Christina Chandras, Michael Zouberakis, Vassilis Aidinis, Damian Smedley, Nadia A. Rosenthal, Klaus Schughart
CASIMIR: Coordination and Sustainability of International Mouse Informatics Resources. BIBE (2008)
Damian Smedley, Morris A. Swertz, Katy Wolstencroft, Glenn Proctor, Michael Zouberakis, Jonathan B. L. Bard, John M. Hancock, Paul N. Schofield
Solutions for data integration in functional genomics: a critical assessment and case study. Briefings Bioinform. 9 (6) (2008)
Christina Chandras, Tom Weaver, Michael Zouberakis, John M. Hancock, Paul N. Schofield, Vassilis Aidinis
Digital preservation - financial sustainability of biological data and material resources. BIBE (2008)
Morris A. Swertz, Damian Smedley, Katy Wolstencroft, Rudi Alberts, Michael Zouberakis, Vassilis Aidinis, Klaus Schughart, Paul N. Schofield, Ritsert C. Jansen
Towards dynamic database infrastructures for mouse genetics. BIBE (2008)
Kai Salomaa, Paul N. Schofield
State Complexity of Additive Weighted Finite Automata. Int. J. Found. Comput. Sci. 18 (6) (2007)
Paul N. Schofield, Jonathan B. L. Bard, Catherine Booth, Jacques Boniver, Vincenzo Covelli, Philippe Delvenne, Michele Ellender, Wilhelm Engstrom, Wolfgang Goessner, Michael Gruenberger, Heinz Hoefler, John Hopewell, Mariatheresa Mancuso, Carmel Mothersill, Christopher S. Potten, Leticia Quintanilla-Fend, Björn Rozell, Hannu Sariola, John P. Sundberg, Andrew Ward
Pathbase: a database of mutant mouse pathology. Nucleic Acids Res. 32 (Database-Issue) (2004)