Shoba Ranganathan

Publication Activity (10 Years)

Years Active: 2001-2021
Publications (10 Years): 7

Top Topics

Biological Data

Redescription Mining

Top Venues

BMC Syst. Biol.

Briefings Bioinform.

Publications

Zainab Noor, Seong Beom Ahn, Mark S. Baker, Shoba Ranganathan, Abidali Mohamedali
Mass spectrometry-based protein identification in proteomics - a review. Briefings Bioinform. 22 (2) (2021)
Ari Hardianto, Varun Khanna, Fei Liu, Shoba Ranganathan
Diverse dynamics features of novel protein kinase C (PKC) isozymes determine the selectivity of a fluorinated balanol analogue for PKCε. BMC Bioinform. (13) (2019)
Zainab Noor, Jemma X. Wu, Dana Pascovici, Abidali Mohamedali, Mark P. Molloy, Mark S. Baker, Shoba Ranganathan
iSwathX: an interactive web-based application for extension of DIA peptide reference libraries. Bioinform. 35 (3) (2019)
Ari Hardianto, Fei Liu, Shoba Ranganathan
Molecular Dynamics Pinpoint the Global Fluorine Effect in Balanoid Binding to PKCε and PKA. J. Chem. Inf. Model. 58 (2) (2018)
Xinrui Zhou, Jie Zheng, Fransiskus Xaverius Ivan, Rui Yin, Shoba Ranganathan, Vincent T. K. Chow, Chee-Keong Kwoh
Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses. BMC Genom. 19 (S2) (2018)
Ari Hardianto, Muhammad Yusuf, Fei Liu, Shoba Ranganathan
Exploration of charge states of balanol analogues acting as ATP-competitive inhibitors in kinases. BMC Bioinform. 18 (16) (2017)
Christian Schönbach, Chandra Verma, Peter J. Bond, Shoba Ranganathan
Bioinformatics and systems biology research update from the 15th International Conference on Bioinformatics (InCoB2016). BMC Bioinform. 17 (S-19) (2016)
Gopichandran Sowmya, Shoba Ranganathan
Discrete structural features among interface residue-level classes. BMC Bioinform. 16 (S18) (2015)
Christian Schönbach, Paul Horton, Siu-Ming Yiu, Tin Wee Tan, Shoba Ranganathan
GIW and InCoB are advancing bioinformatics in the Asia-Pacific. BMC Bioinform. 16 (S18) (2015)
Paul Horton, Christian Schönbach, Shoba Ranganathan, Siu-Ming Yiu
Introduction to selected papers from GIW/InCoB 2015. J. Bioinform. Comput. Biol. 13 (5) (2015)
Shoba Ranganathan, Tin Wee Tan, Christian Schönbach
InCoB2014: Systems Biology update from the Asia-Pacific. BMC Syst. Biol. 8 (S-4) (2014)
Shoba Ranganathan, Tin Wee Tan, Christian Schönbach
InCoB2014: bioinformatics to tackle the data to knowledge challenge. BMC Bioinform. 15 (S-16) (2014)
Christian Schönbach, Bairong Shen, Tin Wee Tan, Shoba Ranganathan
InCoB2013 introduces Systems Biology as a major conference theme. BMC Syst. Biol. 7 (S-3) (2013)
Asif M. Khan, Tin Wee Tan, Christian Schönbach, Shoba Ranganathan
APBioNet - Transforming Bioinformatics in the Asia-Pacific Region. PLoS Comput. Biol. 9 (10) (2013)
Gaurav Kumar, Edmond J. Breen, Shoba Ranganathan
Identification of ovarian cancer associated genes using an integrated approach in a Boolean framework. BMC Syst. Biol. 7 (2013)
Ranjeeta Menon, Gagan Garg, Robin B. Gasser, Shoba Ranganathan
TranSeqAnnotator: large-scale analysis of transcriptomic data. BMC Bioinform. 13 (S-17) (2012)
Christian Schönbach, Sissades Tongsima, Jonathan H. Chan, Vladimir Brusic, Tin Wee Tan, Shoba Ranganathan
InCoB2012 Conference: from biological data to knowledge to technological breakthroughs. BMC Bioinform. 13 (S-17) (2012)
Shoba Ranganathan, Christian Schönbach, Janet Kelso, Burkhard Rost, Sheila Nathan, Tin Wee Tan
Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference. BMC Bioinform. 12 (S-13) (2011)
Javed Mohammed Khan, Harish Reddy Cheruku, Joo Chuan Tong, Shoba Ranganathan
MPID-T2: a database for sequence-structure-function analyses of pMHC and TR/pMHC structures. Bioinform. 27 (8) (2011)
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
Towards BioDBcore: a community-defined information specification for biological databases. Database J. Biol. Databases Curation 2011 (2011)
Varun Khanna, Shoba Ranganathan
In silico approach to screen compounds active against parasitic nematodes of major socio-economic importance. BMC Bioinform. 12 (S-13) (2011)
Varun Khanna, Shoba Ranganathan
Structural diversity of biologically interesting datasets: a scaffold analysis approach. J. Cheminformatics 3 (2011)
Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res. 39 (Database-Issue) (2011)
Gaurav Kumar, Shoba Ranganathan
Network analysis of human protein location. BMC Bioinform. 11 (S-7) (2010)
Md. Tawhidul Islam, M. Shaikh, Abhaya C. Nayak, Shoba Ranganathan
Biomarker information extraction tool (BIET) development using natural language processing and machine learning. ICWET (2010)
Christian Schönbach, Kenta Nakai, Tin Wee Tan, Shoba Ranganathan
International Conference on Bioinformatics at Tokyo, Japan, September 26-28, 2010. BMC Bioinform. 11 (S-7) (2010)
Khar Heng Choo, Tin Wee Tan, Shoba Ranganathan
A comprehensive assessment of N-terminal signal peptides prediction methods. BMC Bioinform. 10 (S-15) (2009)
Shoba Ranganathan
Towards a career in bioinformatics. BMC Bioinform. 10 (S-15) (2009)
Varun Khanna, Shoba Ranganathan
Physicochemical property space distribution among human metabolites, drugs and toxins. BMC Bioinform. 10 (S-15) (2009)
Vladimir Brusic, Shoba Ranganathan
Critical technologies for bioinformatics. Briefings Bioinform. 9 (4) (2008)
Shoba Ranganathan, Wen-Lian Hsu, Ueng-Cheng Yang, Tin Wee Tan
Emerging strengths in Asia Pacific bioinformatics. BMC Bioinform. 9 (S-12) (2008)
Khar Heng Choo, Shoba Ranganathan
Flanking signal and mature peptide residues influence signal peptide cleavage. BMC Bioinform. 9 (S-12) (2008)
Jitendra Gaikwad, Varun Khanna, Subramanyam Vemulpad, Joanne Jamie, Jim Kohen, Shoba Ranganathan
CMKb: a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge. BMC Bioinform. 9 (S-12) (2008)
Lesheng Kong, Shoba Ranganathan
inhibitors. BMC Bioinform. 9 (S-1) (2008)
Khar Heng Choo, Joo Chuan Tong, Shoba Ranganathan
signal peptidase complex with bound substrate: determinants in the mature peptide influencing signal peptide cleavage. BMC Bioinform. 9 (S-1) (2008)
Shoba Ranganathan, Michael Gribskov, Tin Wee Tan
Bioinformatics research in the Asia Pacific: a 2007 update. BMC Bioinform. 9 (S-1) (2008)
Shivashankar H. Nagaraj, Robin B. Gasser, Alasdair J. Nisbet, Shoba Ranganathan
(Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches. BMC Bioinform. 9 (S-1) (2008)
Joo Chuan Tong, Tin Wee Tan, Shoba Ranganathan
grouping of peptide/HLA class I complexes using structural interaction characteristics. Bioinform. 23 (2) (2007)
Kanagasabai Rajaraman, Khar Heng Choo, Shoba Ranganathan, Christopher J. O. Baker
A Workflow for Mutation Extraction and Structure Annotation. J. Bioinform. Comput. Biol. 5 (6) (2007)
Lawrence J. K. Wee, Tin Wee Tan, Shoba Ranganathan
CASVM: web server for SVM-based prediction of caspase substrates cleavage sites. Bioinform. 23 (23) (2007)
Shivashankar H. Nagaraj, Nandan Deshpande, Robin B. Gasser, Shoba Ranganathan
ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Joo Chuan Tong, Tin Wee Tan, Shoba Ranganathan
Methods and protocols for prediction of immunogenic epitopes. Briefings Bioinform. 8 (2) (2007)
Shivashankar H. Nagaraj, Robin B. Gasser, Shoba Ranganathan
A hitchhiker's guide to expressed sequence tag (EST) analysis. Briefings Bioinform. 8 (1) (2007)
Johann Lenffer, Frank W. Nicholas, Kao Castle, Arjun Rao, Stefan Gregory, Michael Poidinger, Matthew D. Mailman, Shoba Ranganathan
OMIA (Online Mendelian Inheritance in Animals): an enhanced platform and integration into the Entrez search interface at NCBI. Nucleic Acids Res. 34 (Database-Issue) (2006)
Joo Chuan Tong, Guanglan Zhang, Tin Wee Tan, J. Thomas August, Vladimir Brusic, Shoba Ranganathan
Prediction of HLA-DQ3.2ß Ligands: evidence of multiple registers in class II binding peptides. Bioinform. 22 (10) (2006)
Durgaprasad Bollina, Bernett T. K. Lee, Tin Wee Tan, Shoba Ranganathan
ASGS: an alternative splicing graph web service. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Shoba Ranganathan, Martti Tammi, Michael Gribskov, Tin Wee Tan
Establishing bioinformatics research in the Asia Pacific. BMC Bioinform. 7 (S-5) (2006)
Joo Chuan Tong, Tin Wee Tan, Animesh A. Sinha, Shoba Ranganathan
Prediction of desmoglein-3 peptides reveals multiple shared T-cell epitopes in HLA DR4- and DR6- associated Pemphigus vulgaris. BMC Bioinform. 7 (S-5) (2006)
Lawrence J. K. Wee, Tin Wee Tan, Shoba Ranganathan
SVM-based prediction of caspase substrate cleavage sites. BMC Bioinform. 7 (S-5) (2006)
Durgaprasad Bollina, Bernett T. K. Lee, Shoba Ranganathan
MVC Architecture in Bioinformatics web applications and its Java implementation. iiWAS (2005)
Khar Heng Choo, Tin Wee Tan, Shoba Ranganathan
SPdb - a signal peptide database. BMC Bioinform. 6 (2005)
Shoba Ranganathan
Bioinformatics Education - Perspectives and Challenges. PLoS Comput. Biol. 1 (6) (2005)
Vivek Gopalan, Tin Wee Tan, Bernett T. K. Lee, Shoba Ranganathan
Xpro: database of eukaryotic protein-encoding genes. Nucleic Acids Res. 32 (Database-Issue) (2004)
Bernett T. K. Lee, Tin Wee Tan, Shoba Ranganathan
exons in splicing graph form. BMC Bioinform. 5 (2004)
Lesheng Kong, Bernett Teck Kwong Lee, Joo Chuan Tong, Tin Wee Tan, Shoba Ranganathan
SDPMOD: an automated comparative modeling server for small disulfide-bonded proteins. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Lesheng Kong, Shoba Ranganathan
Delineation of modular proteins: Domain boundary prediction from sequence information. Briefings Bioinform. 5 (2) (2004)
Bernett T. K. Lee, Tin Wee Tan, Shoba Ranganathan
MGAlignIt: a web service for the alignment of mRNA/EST and genomic sequences. Nucleic Acids Res. 31 (13) (2003)
Vivek Gopalan, Tin Wee Tan, Shoba Ranganathan
XdomView: protein domain and exon position visualization. Bioinform. 19 (1) (2003)
Kunde Ramamoorthy Govindarajan, Pandjassarame Kangueane, Tin Wee Tan, Shoba Ranganathan
MPID: MHC-Peptide Interaction Database for sequence-structure-function information on peptides binding to MHC molecules. Bioinform. 19 (2) (2003)
Russ B. Altman, Alfonso Valencia, Satoru Miyano, Shoba Ranganathan
Challenges for Intelligent Systems in Biology. IEEE Intell. Syst. 16 (6) (2001)