Michael Gribskov

Publication Activity (10 Years)

Years Active: 1984-2022
Publications (10 Years): 12

Top Topics

Gene Expression

Protein Interaction Networks

Frequent Subgraphs

Top Venues

Distributed Parallel Databases

Publications

Liheng Luo, Michael Gribskov, Sufang Wang
Bibliometric review of ATAC-Seq and its application in gene expression. Briefings Bioinform. 23 (3) (2022)
Xiangying Sun, Zhezhen Wang, Johnathon M. Hall, Carlos Perez-Cervantes, Alexander J. Ruthenburg, Ivan P. Moskowitz, Michael Gribskov, Xinan Holly Yang
Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq. PLoS Comput. Biol. 16 (2) (2020)
Mengmeng Zhu, Michael Gribskov
MiPepid: MicroPeptide identification tool using machine learning. BMC Bioinform. 20 (1) (2019)
Junhui Wang, Michael Gribskov
IRESpy: an XGBoost model for prediction of internal ribosome entry sites. BMC Bioinform. 20 (1) (2019)
Khaleel Mershad, Qutaibah M. Malluhi, Mourad Ouzzani, MingJie Tang, Michael Gribskov, Walid G. Aref
AUDIT: approving and tracking updates with dependencies in collaborative databases. Distributed Parallel Databases 36 (1) (2018)
Khaleel Mershad, Qutaibah M. Malluhi, Mourad Ouzzani, MingJie Tang, Michael Gribskov, Walid G. Aref, Deo Prakash
COACT: a query interface language for collaborative databases. Distributed Parallel Databases 36 (1) (2018)
Gladys K. Andino, Marisa Brazil, Michael Gribskov, Preston M. Smith
Advancing the Representation of Women in HPC at Purdue University. PEARC (2017)
Biaobin Jiang, Kyle Kloster, David F. Gleich, Michael Gribskov
AptRank: an adaptive PageRank model for protein function prediction on bi-relational graphs. Bioinform. 33 (12) (2017)
Hao Peng, Yifan Yang, Shandian Zhe, Jian Wang, Michael Gribskov, Yuan Qi
DEIsoM: a hierarchical Bayesian model for identifying differentially expressed isoforms using biological replicates. Bioinform. 33 (19) (2017)
Sufang Wang, Michael Gribskov
Comprehensive evaluation of de novo transcriptome assembly programs and their effects on differential gene expression analysis. Bioinform. 33 (3) (2017)
Sufang Wang, Michael Gribskov, Tony R. Hazbun, Pete E. Pascuzzi
CellMiner Companion: an interactive web application to explore CellMiner NCI-60 data. Bioinform. 32 (15) (2016)
Biaobin Jiang, Kyle Kloster, David F. Gleich, Michael Gribskov
AptRank: an adaptive PageRank model for protein function prediction on bi-relational graphs. CoRR (2016)
Yuta Otsuka, Ai Muto, Rikiya Takeuchi, Chihiro Okada, Motokazu Ishikawa, Koichiro Nakamura, Natsuko Yamamoto, Hitomi Dose, Kenji Nakahigashi, Shigeki Tanishima, Sivasundaram Suharnan, Wataru Nomura, Toru Nakayashiki, Walid G. Aref, Barry R. Bochner, Tyrrell Conway, Michael Gribskov, Daisuke Kihara, Kenneth E. Rudd, Yukako Tohsato, Barry L. Wanner, Hirotada Mori
K-12. Nucleic Acids Res. 43 (Database-Issue) (2015)
Muyi Liu, Michael Gribskov
MMC-margin: Identification of maximum frequent subgraphs by metropolis Monte Carlo sampling. IEEE BigData (2015)
Gladys K. Andino, Michael Gribskov, Greg J. Hunt, Denis Anderson, Jay D. Evans
Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera). BIBM (2015)
Biaobin Jiang, David F. Gleich, Michael Gribskov
Differential flux balance analysis of quantitative proteomic data on protein interaction networks. GlobalSIP (2015)
Kejie Li, Reazur Rahman, Aditi Gupta, Prasad Siddavatam, Michael Gribskov
Pattern Matching in RNA Structures. ISBRA (2008)
Shoba Ranganathan, Michael Gribskov, Tin Wee Tan
Bioinformatics research in the Asia Pacific: a 2007 update. BMC Bioinform. 9 (S-1) (2008)
Shoba Ranganathan, Martti Tammi, Michael Gribskov, Tin Wee Tan
Establishing bioinformatics research in the Asia Pacific. BMC Bioinform. 7 (S-5) (2006)
Jenny Gu, Michael Gribskov, Philip E. Bourne
Wiggle - Predicting Functionally Flexible Regions from Primary Sequence. PLoS Comput. Biol. 2 (7) (2006)
Michael Gribskov
An Open Forum for Computational Biology. PLoS Comput. Biol. 1 (1) (2005)
Michael Gribskov
The ISCB: Growing and Evolving in Step with Science. PLoS Comput. Biol. 1 (5) (2005)
Christina L. Zheng, T. Murlidharan Nair, Michael Gribskov, Y. S. Kwon, Hai-Ri Li, Xiang-Dong Fu
A Database Designed to Computationally Aid an Experimental Approach to Alternative Splicing. Pacific Symposium on Biocomputing (2004)
Michael Gribskov
Challenges in Data Management for Functional Genomics. OMICS 7 (1) (2003)
Jason H. Tchieu, Fariba Fana, J. Lynn Fink, Jeffrey Harper, T. Murlidharan Nair, R. Hannes Niedner, Douglas W. Smith, Kenneth Steube, Tobey M. Tam, Stella Veretnik, Degeng Wang, Michael Gribskov
The PlantsP and PlantsT Functional Genomics Databases. Nucleic Acids Res. 31 (1) (2003)
J. Lynn Fink, Scott Drewes, Hiren Patel, John B. Welsh, Daniel R. Masys, Jacques Corbeil, Michael Gribskov
2HAPI: A Microarray Data Analysis System. Bioinform. 19 (11) (2003)
T. Murlidharan Nair, Christina L. Zheng, J. Lynn Fink, Robert O. Stuart, Michael Gribskov
Rival penalized competitive learning (RPCL): a topology-determining algorithm for analyzing gene expression data. Comput. Biol. Chem. 27 (6) (2003)
Christina L. Zheng, Fariba Fana, Poornaprajna V. Udupi, Michael Gribskov
a program for automatic generation of database interfaces . Comput. Biol. Chem. 27 (2) (2003)
Timothy L. Bailey, Michael Gribskov
Estimating and Evaluating the Statistics of Gapped Local-Alignment Scores. J. Comput. Biol. 9 (3) (2003)
Samson Chien, Lawrence T. Reiter, Ethan Bier, Michael Gribskov
Homophila: human disease gene cognates in Drosophila. Nucleic Acids Res. 30 (1) (2002)
Daniel R. Masys, John B. Welsh, J. Lynn Fink, Michael Gribskov, Igor Klacansky, Jacques Corbeil
Use of keyword hierarchies to interpret gene expression patterns. Bioinform. 17 (4) (2001)
Michael Gribskov, Fariba Fana, Jeffrey Harper, Debra A. Hope, Alice C. Harmon, Douglas W. Smith, Frans E. Tax, Guangfa Zhang
PlantsP: a functional genomics database for plant phosphorylation. Nucleic Acids Res. 29 (1) (2001)
Philip E. Bourne, Michael Gribskov
ISMB-2000: Bioinformatics enters a new millennium. Bioinform. 16 (9) (2000)
Timothy L. Bailey, Michael Gribskov
Concerning the accuracy of MAST E-values. Bioinform. 16 (5) (2000)
Timothy L. Bailey, Michael Gribskov
Methods and Statistics for Combining Motif Match Scores. J. Comput. Biol. 5 (2) (1998)
Timothy L. Bailey, Michael Gribskov
Combining evidence using p-values: application to sequence homology searches. Bioinform. 14 (1) (1998)
Timothy L. Bailey, Michael Gribskov
Score Distributions for Simultaneous Matching to Multiple Motifs. J. Comput. Biol. 4 (1) (1997)
Michael Gribskov, Nina L. Robinson
Use of Receiver Operating Characteristic (ROC) Analysis to Evaluate Sequence Matching. Comput. Chem. 20 (1) (1996)
Timothy L. Bailey, Michael Gribskov
The Megaprior Heuristic for Discovering Protein Sequence Patterns. ISMB (1996)
Michael Gribskov
A Mechanistic View of Proteins and Their Sequences. Comput. Chem. 17 (2) (1993)
Michael Gribskov
The Language Metaphor in Sequence Analysis. Comput. Chem. 16 (2) (1992)
Michael Gribskov, M. Homyak, J. Edenfield, David S. Eisenberg
Profile scanning for three-dimensional structural patterns in protein sequences. Comput. Appl. Biosci. 4 (1) (1988)
Michael Gribskov, R. R. Burgess, J. Devereux
PEPPLOT, a protein secondary structure analysis program for the UWGCG sequence analysis software package. Nucleic Acids Res. 14 (1) (1986)
Michael Gribskov, J. Devereux, R. R. Burgess
The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression. Nucleic Acids Res. 12 (1) (1984)