Fons J. Verbeek

ORCID

Publication Activity (10 Years)

Years Active: 1992-2024
Publications (10 Years): 60

Top Venues

Publications

Nick van Nielen, Fons J. Verbeek, Lu Cao
Visualizing, Analyzing and Constructing L-System from Arborized 3D Model Using a Web Application. BIOSTEC (1) (2024)
Jia Li, Jiangwei Li, Chenxu Wang, Fons J. Verbeek, Tanja Schultz, Hui Liu
MS2OD: outlier detection using minimum spanning tree and medoid selection. Mach. Learn. Sci. Technol. 5 (1) (2024)
Danica Mast, Joost Broekens, Sanne I. de Vries, Fons J. Verbeek
Participation Patterns of Interactive Playful Museum Exhibits: Evaluating the Participant Journey Map through Situated Observations. Conference on Designing Interactive Systems (2023)
Chen Li, Marcel Polling, Lu Cao, Barbara Gravendeel, Fons J. Verbeek
Analysis of automatic image classification methods for Urticaceae pollen classification. Neurocomputing 522 (2023)
Yi Chen, Fons J. Verbeek, Katherine Wolstencroft
FAIR Functional Enrichment: Assessing and Modelling Provenance in Omics Results. SWAT4HCLS (2023)
Xue Wang, Youtian Du, Suzan Verberne, Fons J. Verbeek
Improving weakly supervised phrase grounding via visual representation contextualization with contrastive learning. Appl. Intell. 53 (11) (2023)
Xiaoqin Tang, Lingpeng Lv, Shima Javanmardi, Yunfeng Wang, Jingchuan Fan, Fons J. Verbeek, Guoqiang Xiao
Image Synthesis and Modified BlendMask Instance Segmentation for Automated Nanoparticle Phenotyping. IEEE Trans. Medical Imaging 42 (12) (2023)
Shima Javanmardi, Mehrdad Jahanbanifard, Marcello M. Bonsangue, Fons J. Verbeek
Using a Novel Capsule Network For an Innovative Approach to Image Captioning. SDU@AAAI (2023)
Xue Wang, Youtian Du, Suzan Verberne, Fons J. Verbeek
Fine-grained label learning in object detection with weak supervision of captions. Multim. Tools Appl. 82 (5) (2023)
Zhan Xiong, Junling He, Pieter Valkema, Tri Q. Nguyen, Maarten Naesens, Jesper Kers, Fons J. Verbeek
Advances in Kidney Biopsy Structural Assessment through Dense Instance Segmentation. CoRR (2023)
Jia Li, Junling He, Jingmin Long, Chenxu Wang, Jesper Kers, Fons J. Verbeek
Foreground Extraction in Histo-Pathological Image by Combining Mathematical Morphology Operations and U-Net. BIOIMAGING (2023)
Solomiia Kurchaba, Jasper van Vliet, Fons J. Verbeek, Cor J. Veenman
Detection of anomalously emitting ships through deviations from predicted TROPOMI NO2 retrievals. CoRR (2023)
Erick Paulus, Jean-Christophe Burie, Fons J. Verbeek
Text line extraction strategy for palm leaf manuscripts. Pattern Recognit. Lett. 174 (2023)
Govert G. Brinkmann, Kristian F. D. Rietveld, Fons J. Verbeek, Frank W. Takes
Real-time interactive visualization of large networks on a tiled display system. Displays 73 (2022)
Chen Li, Wilson W. C. Yiu, Wanbin Hu, Lu Cao, Fons J. Verbeek
A Feature Weighted Tracking Method for 3D Neutrophils in Time-lapse Microscopy. BIBM (2022)
Solomiia Kurchaba, Jasper van Vliet, Fons J. Verbeek, Jacqueline J. Meulman, Cor J. Veenman
Supervised Segmentation of NO2 Plumes from Individual Ships Using TROPOMI Satellite Data. Remote. Sens. 14 (22) (2022)
Shima Javanmardi, Ali Mohammad Latif, Mohammad Taghi Sadeghi, Mehrdad Jahanbanifard, Marcello M. Bonsangue, Fons J. Verbeek
Caps Captioning: A Modern Image Captioning Approach Based on Improved Capsule Network. Sensors 22 (21) (2022)
Solomiia Kurchaba, Jasper van Vliet, Fons J. Verbeek, Jacqueline J. Meulman, Cor J. Veenman
Supervised segmentation of NO2 plumes from individual ships using TROPOMI satellite data. CoRR (2022)
Lise Stork, Andreas Weber, H. Jaap van den Herik, Aske Plaat, Fons J. Verbeek, Katherine Wolstencroft
Large-scale zero-shot learning in the wild: Classifying zoological illustrations. Ecol. Informatics 62 (2021)
Yi Chen, Fons J. Verbeek, Katherine Wolstencroft
Establishing a consensus for the hallmarks of cancer based on gene ontology and pathway annotations. BMC Bioinform. 22 (1) (2021)
Mohamed S. Elmahdy, Laurens Beljaards, Sahar Yousefi, Hessam Sokooti, Fons J. Verbeek, Uulke A. van der Heide, Marius Staring
Joint Registration and Segmentation via Multi-Task Learning for Adaptive Radiotherapy of Prostate Cancer. IEEE Access 9 (2021)
Mohamed S. Elmahdy, Laurens Beljaards, Sahar Yousefi, Hessam Sokooti, Fons J. Verbeek, Uulke A. van der Heide, Marius Staring
Joint Registration and Segmentation via Multi-Task Learning for Adaptive Radiotherapy of Prostate Cancer. CoRR (2021)
Danica Mast, Sanne I. de Vries, Joost Broekens, Fons J. Verbeek
The Participant Journey Map: Understanding the Design of Interactive Augmented Play Spaces. Frontiers Comput. Sci. 3 (2021)
Alan Zammit, Leon S. Helwerda, René C. L. Olsthoorn, Fons J. Verbeek, Alexander P. Gultyaev
A database of flavivirus RNA structures with a search algorithm for pseudoknots and triple base interactions. Bioinform. 37 (7) (2021)
Solomiia Kurchaba, Jasper van Vliet, Jacqueline J. Meulman, Fons J. Verbeek, Cor J. Veenman
Improving evaluation of NO2 emission from ships using spatial association on TROPOMI satellite data. SIGSPATIAL/GIS (2021)
Seyed-Hassan Miraei Ashtiani, Shima Javanmardi, Mehrdad Jahanbanifard, Alex Martynenko, Fons J. Verbeek
Detection of Mulberry Ripeness Stages Using Deep Learning Models. IEEE Access 9 (2021)
Erick Paulus, Jean-Christophe Burie, Fons J. Verbeek
Binarization Strategy Using Multiple Convolutional Autoencoder Network for Old Sundanese Manuscript Images. ICDAR Workshops (2) (2021)
Lu Cao, Andries D. van der Meer, Fons J. Verbeek, Robert Passier
Automated image analysis system for studying cardiotoxicity in human pluripotent stem cell-Derived cardiomyocytes. BMC Bioinform. 21 (1) (2020)
Laurens Beljaards, Mohamed S. Elmahdy, Fons J. Verbeek, Marius Staring
A Cross-Stitch Architecture for Joint Registration and Segmentation in Adaptive Radiotherapy. MIDL (2020)
Yuanhao Guo, Fons J. Verbeek, Ge Yang
Probabilistic Inference for Camera Calibration in Light Microscopy Under Circular Motion. ISBI (2020)
Xiaoqin Tang, Hermes A. J. Spaink, Rob C. van Wijk, Fons J. Verbeek
Segmentation-Driven Optimization For Iterative Reconstruction in Optical Projection Tomography: An Exploration. IEEE Trans. Computational Imaging 6 (2020)
Fons J. Verbeek, Lu Cao
L-systems from 3D-imaging of Phenotypes of Arborized Structures. Fundam. Informaticae 175 (1-4) (2020)
Danica Mast, Sanne de Vries, Joost Broekens, Fons J. Verbeek
The Importance of the Peak-End Rule for Repeated Visits to Augmented Play Spaces. PERSUASIVE (Adjunct) (2020)
Laurens Beljaards, Mohamed S. Elmahdy, Fons J. Verbeek, Marius Staring
A Cross-Stitch Architecture for Joint Registration and Segmentation in Adaptive Radiotherapy. CoRR (2020)
Irene Martorelli, Leon S. Helwerda, Jesse Kerkvliet, Sofia I. F. Gomes, Jorinde Nuytinck, Chivany R. A. van der Werff, Guus J. Ramackers, Alexander P. Gultyaev, Vincent S. F. T. Merckx, Fons J. Verbeek
Fungal metabarcoding data integration framework for the MycoDiversity DataBase (MDDB). J. Integr. Bioinform. 17 (1) (2020)
Lise Stork, Andreas Weber, H. Jaap van den Herik, Aske Plaat, Fons J. Verbeek, Katherine Wolstencroft
Automated Semantic Annotation of Species Names in Handwritten Texts. ECIR (1) (2019)
Xiaoqin Tang, Gerda Lamers, Fons J. Verbeek
3D Image Deblur using Point Spread Function Modelling for Optical Projection Tomography. BIOIMAGING (2019)
Lise Stork, Andreas Weber, Eulalia Gasso Miracle, Fons J. Verbeek, Aske Plaat, H. Jaap van den Herik, Katherine Wolstencroft
Semantic annotation of natural history collections. J. Web Semant. 59 (2019)
Yuanhao Guo, Fons J. Verbeek, Ge Yang
Probabilistic Inference for Camera Calibration in Light Microscopy under Circular Motion. CoRR (2019)
Arthur van Rooijen, Henri Bouma, Fons J. Verbeek
Fast and Accurate Person Re-identification with Xception Conv-Net and C2F. CIARP (2018)
Lise Stork, Andreas Weber, H. Jaap van den Herik, Aske Plaat, Fons J. Verbeek, Katherine Wolstencroft
From Handwritten Manuscripts to Linked Data. TPDL (2018)
Yuanhao Guo, Zhan Xiong, Fons J. Verbeek
An efficient and robust hybrid method for segmentation of zebrafish objects from bright-field microscope images. Mach. Vis. Appl. 29 (8) (2018)
Remi Alkemade, Fons J. Verbeek, Stephan G. Lukosch
On the Efficiency of a VR Hand Gesture-Based Interface for 3D Object Manipulations in Conceptual Design. Int. J. Hum. Comput. Interact. 33 (11) (2017)
Yuanhao Guo, Yunpeng Zhang, Fons J. Verbeek
A Two-Phase 3-D Reconstruction Approach for Light Microscopy Axial-View Imaging. IEEE J. Sel. Top. Signal Process. 11 (7) (2017)
Yuanhao Guo, Hermes A. J. Spaink, E. H. J. Krekels, Herman P. Spaink, Piet H. Van Der Graaf, Fons J. Verbeek
Multi-modal 3d reconstruction and measurements of zebrafish larvae and its organs using axial-view microscopy. ICIP (2017)
Leon S. Helwerda, Frank Niessink, Fons J. Verbeek
Conceptual Process Models and Quantitative Analysis of Classification Problems in Scrum Software Development Practices. KDIR (2017)
Zhan Xiong, Fons J. Verbeek
Segmentation of Zebrafish Larva Inhomogeneous 3D Images Using the Level-Set Method. Visualization and Data Analysis (2016)
Xiaoqin Tang, Merel van't Hoff, Jerry Hoogenboom, Yuanhao Guo, Fuyu Cai, Gerda Lamers, Fons J. Verbeek
Fluorescence and bright-field 3D image fusion based on sinogram unification for optical projection tomography. BIBM (2016)
Livia Teernstra, Peter van der Putten, Liesbeth Noordegraaf-Eelens, Fons J. Verbeek
The Morality Machine: Tracking Moral Values in Tweets. IDA (2016)
Lu Cao, Marjo de Graauw, Kuan Yan, Leah Winkel, Fons J. Verbeek
Hierarchical classification strategy for Phenotype extraction from epidermal growth factor receptor endocytosis screening. BMC Bioinform. 17 (2016)
Enrique Larios Vargas, Zhihan Xia, Joris Slob, Fons J. Verbeek
A Semantic-Based Metadata Validation for an Automated High-Throughput Screening Workflow: Case Study in CytomicsDB. IWBBIO (2016)
Laura M. F. Bertens, Jetty Kleijn, Sander C. Hille, Monika Heiner, Maciej Koutny, Fons J. Verbeek
Modeling biological gradient formation: combining partial differential equations and Petri nets. Nat. Comput. 15 (4) (2016)
Marcello A. Gómez Maureira, Fons J. Verbeek
The Impact of Co-Located Play on Social Presence and Game Experience in a VR Game. DiGRA/FDG (2016)
Lambert Schomaker, Andreas Weber, Michiel Thijssen, Maarten Heerlien, Aske Plaat, Siegfried Nijssen, Fons J. Verbeek, Michael S. Lew, Eulalia Gasso Miracle, Katy Wolstencroft, Ernest Suyver, Bart Verheij, Marco A. Wiering, René Dekker, Joost N. Kok, Lissa Roberts, H. Jaap van den Herik
Making Sense of Illustrated Handwritten Archives. DH (2016)
Fuyu Cai, Fons J. Verbeek
Rough Fuzzy C-means and Particle Swarm Optimization Hybridized Method for Information Clustering Problem. J. Commun. 11 (12) (2016)
Fuyu Cai, Fons J. Verbeek
Dam-based rolling ball with fuzzy-rough constraints, a new background subtraction algorithm for image analysis in microscopy. IPTA (2015)
Mohamed S. Tleis, Fons J. Verbeek
Machine Learning approach to discriminate Saccharomyces cerevisiae yeast cells using sophisticated image features. J. Integr. Bioinform. 12 (3) (2015)
Rafael V. Carvalho, Jeroen van den Heuvel, Jetty Kleijn, Fons J. Verbeek
Coupling of Petri Net Models of the Mycobacterial Infection Process and Innate Immune Response. Comput. 3 (2) (2015)
Mohamed Tleis, Fons J. Verbeek
Contour expansion algorithm preprocessed by hough transform and circular shortest path for ovoid objects. IPTA (2015)
Yuanhao Guo, Wouter J. Veneman, Herman P. Spaink, Fons J. Verbeek
Silhouette-based 3D model for zebrafish high-throughput imaging. IPTA (2015)
Rafael V. Carvalho, Jetty Kleijn, Fons J. Verbeek
A multi-scale extensive Petri net model of the bacterial-macrophage interaction. BioPPN@Petri Nets (2014)
Mohamed Tleis, Fons J. Verbeek
Extracting contours of oval-shaped objects by Hough transform and minimal path algorithms. ICDIP (2014)
E. Larios, Y. Zhang, Lu Cao, Fons J. Verbeek
CytomicsDB: A Metadata-Based Storage and Retrieval Approach for High-Throughput Screening Experiments. PRIB (2014)
Lu Cao, Fons J. Verbeek
Analytical evaluation of algorithms for point cloud surface reconstruction using shape features. J. Electronic Imaging 22 (4) (2013)
Maarten H. Lamers, Wim van Eck, Fons J. Verbeek
Track E: Hybrid biological-digital systems. DEST (2013)
Lu Cao, Fons J. Verbeek
Nature Inspired Phenotype Analysis with 3D Model Representation Optimization. IBICA (2013)
Maarten H. Lamers, Fons J. Verbeek, Peter W. H. van der Putten
Tinkering in Scientific Education. Advances in Computer Entertainment (2013)
E. Larios, Y. Zhang, K. Yan, Z. Di, S. LeDévédec, Fabian Groffen, Fons J. Verbeek
Automation in Cytomics: A Modern RDBMS Based Platform for Image Analysis and Management in High-Throughput Screening Experiments. HIS (2012)
Hernando Sanchez-Faddeev, Michael T. M. Emmerich, Fons J. Verbeek, Andrew H. Henry, Simon Grimshaw, Herman P. Spaink, Herman W. T. van Vlijmen, Andreas Bender
Using Multiobjective Optimization and Energy Minimization to Design an Isoform-Selective Ligand of the 14-3-3 Protein. ISoLA (2) (2012)
Dome Potikanond, Fons J. Verbeek
Visualization and analysis of 3D gene expression patterns in zebrafish using web services. Visualization and Data Analysis (2012)
Alexander E. Nezhinsky, Esther Stoop, Astrid van der Sar, Fons J. Verbeek
Numerical Analysis of Image based High Throughput Zebrafish Infection Screens - Matching Meaning with Data. BIOINFORMATICS (2012)
Jinshuo Liu, Hui Wu, Qin Cao, Baifang Zhang, Yichun Gu, Mengfei Ren, Han Li, Fons J. Verbeek
Caveolae image analysis for pathogen diabetes. BMEI (2012)
Kuan Yan, Fons J. Verbeek
Segmentation for High-Throughput Image Analysis: Watershed Masked Clustering. ISoLA (2) (2012)
Joost N. Kok, Anna-Lena Lamprecht, Fons J. Verbeek, Mark D. Wilkinson
Bioscientific Data Processing and Modeling. ISoLA (2) (2012)
Alexander E. Nezhinsky, Fons J. Verbeek
Efficient and Robust Shape Retrieval from Deformable Templates. ISoLA (2) (2012)
Rafael V. Carvalho, Jetty Kleijn, Annemarie H. Meijer, Fons J. Verbeek
Infection. Comput. Math. Methods Medicine 2012 (2012)
Lu Cao, Fons J. Verbeek
Evaluation of algorithms for point cloud surface reconstruction through the analysis of shape parameters. Three-Dimensional Image Processing (3DIP) and Applications (2012)
Yanju Zhang, Elia Stupka, Christiaan V. Henkel, Hans J. Jansen, Herman P. Spaink, Fons J. Verbeek
Identification of Common Carp Innate Immune Genes with Whole-Genome Sequencing and RNA-Seq Data. J. Integr. Bioinform. 8 (2) (2011)
Lu Cao, Kuan Yan, Leah Winkel, Marjo de Graauw, Fons J. Verbeek
Pattern Recognition in High-Content Cytomics Screens for Target Discovery - Case Studies in Endocytosis. PRIB (2011)
Michael Hawrylycz, Richard A. Baldock, Albert Burger, Tsutomu Hashikawa, G. Allan Johnson, Maryann E. Martone, Lydia Ng, Christopher Lau, Stephen D. Larson, Jonathan Nissanov, Luis Puelles, Seth Ruffins, Fons J. Verbeek, Ilya Zaslavsky, Jyl Boline
Digital Atlasing and Standardization in the Mouse Brain. PLoS Comput. Biol. 7 (2) (2011)
Rafael V. Carvalho, Willem Davids, Annemarie H. Meijer, Fons J. Verbeek
Spatio-temporal Modeling and Simulation of Mycobacterium Pathogenesis Using Petri Nets. BIONETICS (2011)
Julia Dmitrieva, Fons J. Verbeek
Modular Approach for a New Ontology. WoMO (2011)
Laura M. F. Bertens, Joris Slob, Fons J. Verbeek
A generic organ based ontology system, applied to vertebrate heart anatomy, development and physiology. J. Integr. Bioinform. 8 (2) (2011)
H. Jaap van den Herik, Maarten H. Lamers, Fons J. Verbeek
Understanding the Artificial. Int. J. Soc. Robotics 3 (2) (2011)
Alexander E. Nezhinsky, Johannes W. Kruisselbrink, Fons J. Verbeek
Convex Shape Retrieval from Edge Maps by the use of an Evolutionary Algorithm. BIOINFORMATICS (2010)
Amalia Kallergi, Fons J. Verbeek
Video games for collection exploration: games for and out of data repositories. MindTrek (2010)
Ronnie Bathoorn, Monique C. M. Welten, Michael Richardson, Arno Siebes, Fons J. Verbeek
Frequent Episode Mining to Support Pattern Analysis in Developmental Biology. PRIB (2010)
Yanju Zhang, Fons J. Verbeek
Comparison and Integration of Target Prediction Algorithms for microRNA Studies. J. Integr. Bioinform. 7 (3) (2010)
Julia Dmitrieva, Fons J. Verbeek
Creating a new Ontology: a Modular Approach CoRR (2010)
Julia Dmitrieva, Fons J. Verbeek
Different geometries in ontology visualization. VDA (2010)
Alexander E. Nezhinsky, Fons J. Verbeek
Pattern Recognition for High Throughput Zebrafish Imaging Using Genetic Algorithm Optimization. PRIB (2010)
Mounia Belmamoune, Dome Potikanond, Fons J. Verbeek
Mining and Analysing Spatio-Temporal Patterns of Gene Expression in an Integrative Database Framework. J. Integr. Bioinform. 7 (3) (2010)
Amalia Kallergi, Fons J. Verbeek
Onto-Frogger: the making of. NordiCHI (2010)
Laura M. F. Bertens, Jetty Kleijn, Maciej Koutny, Fons J. Verbeek
Modelling Gradients using Petri Nets. ACSD/Petri Nets Workshops (2010)
Julia Dmitrieva, Fons J. Verbeek
Creating a new Ontology: a Modular Approach. SWAT4LS (2010)
Julia Dmitrieva, Fons J. Verbeek
Node-Link and Containment Methods in Ontology Visualization. OWLED (2009)
Christina Papakonstantinou, Ioannis Panagiotou, Fons J. Verbeek
The TicTag application: towards tag-based meta-search for browsing the web. BCS HCI (2009)
Kuan Yan, Fons J. Verbeek, Sylvia Le Dévédec, Bob van de Water
Cell Tracking and Data Analysis of in Vitro Tumour Cells from Time-lapse Image Sequences. VISAPP (1) (2009)
Julia Dmitrieva, Fons J. Verbeek
Integration of information from different ontologies. SWAT4LS (2009)
Amalia Kallergi, Fons J. Verbeek
Onto-Frogger: Playing with Semantic Structure. SWAT4LS (2009)

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Publication Activity (10 Years)

Top Topics

Top Venues

Fons J. Verbeek