Stephen D. Larson

Publication Activity (10 Years)

Years Active: 2007-2016
Publications (10 Years): 2

Top Topics

Caenorhabditis Elegans

Dynamic Epistemic Logic

Model Validation

Physical Environment

Top Venues

Frontiers Neuroinformatics

Frontiers Comput. Neurosci.

Adv. Eng. Softw.

Publications

Andrey Palyanov, Sergey Khayrulin, Stephen D. Larson
Application of smoothed particle hydrodynamics to modeling mechanisms of biological tissue. Adv. Eng. Softw. 98 (2016)
Gopal P. Sarma, Travis W. Jacobs, Mark D. Watts, S. Vahid Ghayoomie, Stephen D. Larson, Richard C. Gerkin
Unit testing, model validation, and biological simulation. F1000Research 5 (2016)
Gopal Sarma, Travis W. Jacobs, Mark D. Watts, Vahid Ghayoomi, Richard C. Gerkin, Stephen D. Larson
Unit Testing, Model Validation, and Biological Simulation. CoRR (2015)
Balazs Szigeti, Padraig Gleeson, Michael Vella, Sergey Khayrulin, Andrey Palyanov, Jim Hokanson, Michael Currie, Matteo Cantarelli, Giovanni Idili, Stephen D. Larson
OpenWorm: an open-science approach to modeling Caenorhabditis elegans. Frontiers Comput. Neurosci. 8 (2014)
Stephen D. Larson, Maryann E. Martone
NeuroLex.org: an online framework for neuroscience knowledge. Frontiers Neuroinformatics 7 (2013)
Fahim T. Imam, Stephen D. Larson, Anita E. Bandrowski, Jeffrey S. Grethe, Amarnath Gupta, Maryann E. Martone
Maturation of Neuroscience Information Framework: An Ontology Driven Information System for Neuroscience. FOIS (2012)
Andrey Palyanov, Sergey Khayrulin, Stephen D. Larson, Alexander Dibert
Towards a virtual C. elegans: A framework for simulation and visualization of the neuromuscular system in a 3D physical environment. Silico Biol. 11 (3-4) (2012)
Chris Mungall, David Anderson, Anita E. Bandrowski, Brian A. Canada, Andrew Chatr-aryamontri, Keith C. Cheng, P. Michael Conn, Kara Dolinski, Mark H. Ellisman, Janan T. Eppig, Jeffrey S. Grethe, Joseph W. Kemnitz, Shawn Iadonato, Stephen D. Larson, Charles Magness, Maryann E. Martone, Mike Tyers, Carlo Torniai, Olga G. Troyanskaya, Judith Turner, Monte Westerfield, Melissa A. Haendel
An Ontology-Based Approach to Linking Model Organisms and Resources to Human Diseases. ICBO (2011)
Michael Hawrylycz, Richard A. Baldock, Albert Burger, Tsutomu Hashikawa, G. Allan Johnson, Maryann E. Martone, Lydia Ng, Christopher Lau, Stephen D. Larson, Jonathan Nissanov, Luis Puelles, Seth Ruffins, Fons J. Verbeek, Ilya Zaslavsky, Jyl Boline
Digital Atlasing and Standardization in the Mouse Brain. PLoS Comput. Biol. 7 (2) (2011)
Fahim T. Imam, Stephen D. Larson, Jeffrey S. Grethe, Amarnath Gupta, Anita E. Bandrowski, Maryann E. Martone
NIFSTD and NeuroLex: Comprehensive Neuroscience Ontology Development Based on Multiple Biomedical Ontologies and Community Involvement. ICBO (2011)
Stephen D. Larson, Sarah Maynard, Fahim T. Imam, Maryann E. Martone
NeuroLex.org - A semantic wiki for neuroinformatics based on the NIF Standard Ontology. SWAT4LS (2009)
William J. Bug, Giorgio A. Ascoli, Jeffrey S. Grethe, Amarnath Gupta, Christine Fennema-Notestine, Angela R. Laird, Stephen D. Larson, Daniel L. Rubin, Gordon M. Shepherd, Jessica A. Turner, Maryann E. Martone
The NIFSTD and BIRNLex Vocabularies: Building Comprehensive Ontologies for Neuroscience. Neuroinformatics 6 (3) (2008)
Amarnath Gupta, Stephen D. Larson, Christopher Condit, Sandeep Gupta, Lisa Fong, Li Chen, Maryann E. Martone
Toward an Ontological Database for Subcellular Neuroanatomy. ER Workshops (2007)
Lisa Fong, Stephen D. Larson, Amarnath Gupta, Christopher Condit, William J. Bug, Li Chen, Ruth West, Stephan Lamont, Masako Terada, Maryann E. Martone
An Ontology-Driven Knowledge Environment For Subcellular Neuroanatomy. OWLED (2007)
Stephen D. Larson, Maryann E. Martone
Rule-Based Reasoning With A Multi-Scale Neuroanatomical Ontology. OWLED (2007)
Stephen D. Larson, Lisa Fong, Amarnath Gupta, Christopher Condit, William J. Bug, Maryann E. Martone
A formal ontology of subcellular neuroanatomy. Frontiers Neuroinformatics 1 (2007)