G. Allan Johnson

Publication Activity (10 Years)

Years Active: 1997-2024
Publications (10 Years): 12

Top Topics

Corpus Callosum

Diffusion Tensor

Top Venues

Frontiers Neuroinformatics

Publications

Xinyue Han, Surendra Maharjan, Jie Chen, Yi Zhao, Yi Qi, Leonard E. White, G. Allan Johnson, Nian Wang
High-resolution diffusion magnetic resonance imaging and spatial-transcriptomic in developing mouse brain. NeuroImage 297 (2024)
Stephanie Crater, Surendra Maharjan, Yi Qi, Qi Zhao, Gary P. Cofer, James C. Cook, G. Allan Johnson, Nian Wang
Resolution and b value dependent structural connectome in ex vivo mouse brain. NeuroImage 255 (2022)
G. Allan Johnson, Rick Laoprasert, Robert J. Anderson, Gary P. Cofer, James J. Cook, Forrest Pratson, Leonard E. White
A multicontrast MR atlas of the Wistar rat brain. NeuroImage 242 (2021)
Syed M. Adil, Evan Calabrese, Lefko T. Charalambous, James J. Cook, Shervin Rahimpour, Ahmet Fatih Atik, Gary P. Cofer, Beth A. Parente, G. Allan Johnson, Shivanand P. Lad, Leonard E. White
A high-resolution interactive atlas of the human brainstem using magnetic resonance imaging. NeuroImage 237 (2021)
Nian Wang, Leonard E. White, Yi Qi, Gary P. Cofer, G. Allan Johnson
Cytoarchitecture of the mouse brain by high resolution diffusion magnetic resonance imaging. NeuroImage 216 (2020)
Nian Wang, Robert J. Anderson, David G. Ashbrook, Vivek Gopalakrishnan, Youngser Park, Carey E. Priebe, Yi Qi, Rick Laoprasert, Joshua T. Vogelstein, Robert W. Williams, G. Allan Johnson
Variability and heritability of mouse brain structure: Microscopic MRI atlases and connectomes for diverse strains. NeuroImage 222 (2020)
Alexandra Badea, Wenlin Wu, Jordan Shuff, Michele Wang, Robert J. Anderson, Yi Qi, G. Allan Johnson, Joan G. Wilson, Serge Koudoro, Eleftherios Garyfallidis, Carol A. Colton, David B. Dunson
Identifying Vulnerable Brain Networks in Mouse Models of Genetic Risk Factors for Late Onset Alzheimer's Disease. Frontiers Neuroinformatics 13 (2019)
Robert J. Anderson, James J. Cook, Natalie A. Delpratt, John C. Nouls, Bin Gu, James O. McNamara, Brian B. Avants, G. Allan Johnson, Alexandra Badea
Small Animal Multivariate Brain Analysis (SAMBA) - a High Throughput Pipeline with a Validation Framework. Neuroinformatics 17 (3) (2019)
Ahmet Fatih Atik, Evan Calabrese, Robert Gramer, Syed M. Adil, Shervin Rahimpour, Promila Pagadala, G. Allan Johnson, Shivanand P. Lad
Structural mapping with fiber tractography of the human cuneate fasciculus at microscopic resolution in cervical region. NeuroImage 196 (2019)
Robert J. Anderson, James J. Cook, Natalie A. Delpratt, John C. Nouls, Bin Gu, James O. McNamara, Brian B. Avants, G. Allan Johnson, Alexandra Badea
An HPC Pipeline with Validation Framework for Small Animal Multivariate Brain Analysis (SAMBA). CoRR (2017)
G. Allan Johnson, Robert J. Anderson, James J. Cook, Christopher Long, Alexandra Badea
Image-processing pipelines: applications in magnetic resonance histology. Medical Imaging: Image Processing (2016)
Hongjiang Wei, Luke Xie, Russell Dibb, Wei Li, Kyle Decker, Yuyao Zhang, G. Allan Johnson, Chunlei Liu
Imaging whole-brain cytoarchitecture of mouse with MRI-based quantitative susceptibility mapping. NeuroImage 137 (2016)
Eszter A. Papp, Trygve B. Leergaard, Evan Calabrese, G. Allan Johnson, Jan G. Bjaalie
Addendum to "Waxholm Space atlas of the Sprague Dawley rat brain" [NeuroImage 97 (2014) 374-386]. NeuroImage 105 (2015)
Evan Calabrese, Alexandra Badea, Christopher L. Coe, Gabriele R. Lubach, Yundi Shi, Martin Andreas Styner, G. Allan Johnson
A diffusion tensor MRI atlas of the postmortem rhesus macaque brain. NeuroImage 117 (2015)
Ioannis Argyridis, Wei Li, G. Allan Johnson, Chunlei Liu
Quantitative magnetic susceptibility of the developing mouse brain reveals microstructural changes in the white matter. NeuroImage 88 (2014)
Samuel M. Johnston, G. Allan Johnson, Cristian T. Badea
Helical dual source cone-beam micro-CT. ISBI (2014)
Eszter A. Papp, Trygve B. Leergaard, Evan Calabrese, G. Allan Johnson, Jan G. Bjaalie
Waxholm Space atlas of the Sprague Dawley rat brain. NeuroImage 97 (2014)
Wei Cao, Wei Li, Hui Han, Shonagh K. O'Leary-Moore, Kathleen K. Sulik, G. Allan Johnson, Chunlei Liu
Prenatal alcohol exposure reduces magnetic susceptibility contrast and anisotropy in the white matter of mouse brains. NeuroImage 102 (2014)
Evan Calabrese, Alexandra Badea, Charles Watson, G. Allan Johnson
A quantitative magnetic resonance histology atlas of postnatal rat brain development with regional estimates of growth and variability. NeuroImage 71 (2013)
Evan Calabrese, G. Allan Johnson
Diffusion tensor magnetic resonance histology reveals microstructural changes in the developing rat brain. NeuroImage 79 (2013)
Darin P. Clark, Alexandra Badea, G. Allan Johnson, Cristian T. Badea
Constructing a 4D murine cardiac micro-CT atlas for automated segmentation and phenotyping applications. Medical Imaging: Image Processing (2013)
Evan Calabrese, G. Allan Johnson, Charles Watson
An ontology-based segmentation scheme for tracking postnatal changes in the developing rodent brain with MRI. NeuroImage 67 (2013)
G. Allan Johnson, Evan Calabrese, Alexandra Badea, George Paxinos, Charles Watson
A multidimensional magnetic resonance histology atlas of the Wistar rat brain. NeuroImage 62 (3) (2012)
Dimitrios Perperidis, Elizabeth Bucholz, G. Allan Johnson, Christakis Constantinides
Morphological studies of the murine heart based on probabilistic and statistical atlases. Comput. Medical Imaging Graph. 36 (2) (2012)
Alexandra Badea, Sally L. Gewalt, Brian B. Avants, James J. Cook, G. Allan Johnson
Quantitative mouse brain phenotyping based on single and multispectral MR protocols. NeuroImage 63 (3) (2012)
Darin P. Clark, G. Allan Johnson, Cristian T. Badea
Denoising of 4D cardiac micro-CT data using median-centric bilateral filtration. Medical Imaging: Image Processing (2012)
Chunlei Liu, Wei Li, Bing Wu, Yi Jiang, G. Allan Johnson
3D fiber tractography with susceptibility tensor imaging. NeuroImage 59 (2) (2012)
Chunlei Liu, Wei Li, G. Allan Johnson, Bing Wu
High-field (9.4 T) MRI of brain dysmyelination by quantitative mapping of magnetic susceptibility. NeuroImage 56 (3) (2011)
Michael Hawrylycz, Richard A. Baldock, Albert Burger, Tsutomu Hashikawa, G. Allan Johnson, Maryann E. Martone, Lydia Ng, Christopher Lau, Stephen D. Larson, Jonathan Nissanov, Luis Puelles, Seth Ruffins, Fons J. Verbeek, Ilya Zaslavsky, Jyl Boline
Digital Atlasing and Standardization in the Mouse Brain. PLoS Comput. Biol. 7 (2) (2011)
Yi Jiang, G. Allan Johnson
Microscopic diffusion tensor atlas of the mouse brain. NeuroImage 56 (3) (2011)
Jelle Veraart, Trygve B. Leergaard, Bjørnar T. Antonsen, Wim Van Hecke, Ines Blockx, Ben Jeurissen, Yi Jiang, Annemie van der Linden, G. Allan Johnson, Marleen Verhoye, Jan Sijbers
Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain. NeuroImage 58 (4) (2011)
Yi Jiang, G. Allan Johnson
Microscopic diffusion tensor imaging of the mouse brain. NeuroImage 50 (2) (2010)
Gabriel P. Howles, Yi Qi, G. Allan Johnson
Ultrasonic disruption of the blood-brain barrier enables in vivo functional mapping of the mouse barrel field cortex with manganese-enhanced MRI. NeuroImage 50 (4) (2010)
G. Allan Johnson, Alexandra Badea, Jeffrey Brandenburg, Gary P. Cofer, Boma Fubara, Song Liu, Jonathan Nissanov
Waxholm Space: An image-based reference for coordinating mouse brain research. NeuroImage 53 (2) (2010)
Alexandra Badea, G. Allan Johnson, Joanna L. Jankowsky
Remote sites of structural atrophy predict later amyloid formation in a mouse model of Alzheimer's disease. NeuroImage 50 (2) (2010)
Christakis Constantinides, Nicolas Aristokleous, G. Allan Johnson, D. Perperides
Static and dynamic cardiac modelling: initial strides and results towards a quantitatively accurate mechanical heart model. ISBI (2010)
Allan MacKenzie-Graham, Seema K. Tiwari-Woodruff, Gaurav Sharma, Cynthia Aguilar, Kieumai T. Vo, Lauren V. Strickland, Laurie Morales, Boma Fubara, Melanie Martin, Russell E. Jacobs, G. Allan Johnson, Arthur W. Toga, Rhonda R. Voskuhl
Purkinje cell loss in experimental autoimmune encephalomyelitis. NeuroImage 48 (4) (2009)
Jiayu Song, Yanhui Liu, Sally L. Gewalt, Gary P. Cofer, G. Allan Johnson, Qing Huo Liu
Least-Square NUFFT Methods Applied to 2-D and 3-D Radially Encoded MR Image Reconstruction. IEEE Trans. Biomed. Eng. 56 (4) (2009)
Alexandra Badea, G. Allan Johnson, Robert W. Williams
Genetic dissection of the mouse brain using high-field magnetic resonance microscopy. NeuroImage 45 (4) (2009)
Anjum A. Sharief, Alexandra Badea, Anders M. Dale, G. Allan Johnson
Automated segmentation of the actively stained mouse brain using multi-spectral MR microscopy. NeuroImage 39 (1) (2008)
Cristian T. Badea, Arthur W. Wetzel, Nilesh Mistry, Stuart M. Pomerantz, Démian Nave, G. Allan Johnson
Left ventricle volume measurements in cardiac micro-CT: The impact of radiation dose and contrast agent. Comput. Medical Imaging Graph. 32 (3) (2008)
Ming De Lin, Lutao Ning, Cristian T. Badea, Nilesh Mistry, Yi Qi, G. Allan Johnson
A High-Precision Contrast Injector for Small Animal X-Ray Digital Subtraction Angiography. IEEE Trans. Biomed. Eng. 55 (3) (2008)
Alexandra Badea, Peter Nicholls, G. Allan Johnson, William C. Wetsel
Neuroanatomical phenotypes in the Reeler mouse. NeuroImage 34 (4) (2007)
Alexandra Badea, A. A. Ali-Sharief, G. Allan Johnson
Morphometric analysis of the C57BL/6J mouse brain. NeuroImage 37 (3) (2007)
G. Allan Johnson, Anjum Ali-Sharief, Alexandra Badea, Jeffrey Brandenburg, Gary P. Cofer, Boma Fubara, Sally L. Gewalt, Laurence W. Hedlund, Lucy Upchurch
High-throughput morphologic phenotyping of the mouse brain with magnetic resonance histology. NeuroImage 37 (1) (2007)
Ming De Lin, Laurence Hedlund, G. Allan Johnson
Micro radiography imaging of the rodent with phenylephrine induced vascular hypertension. ISBI (2006)
Nilesh Mistry, Ming De Lin, Laurence Hedlund, G. Allan Johnson
Multimodality imaging of pulmonary function in the rodent. ISBI (2006)
Cristian T. Badea, Laurence Hedlund, Ming De Lin, Julie F. Boslego, G. Allan Johnson
Functional imaging in small animals using tomographic digital subtraction angiography. ISBI (2006)
Anjum A. Sharief, Anders M. Dale, Alexandra Badea, G. Allan Johnson
Automated segmentation of neuroanatomical structures in multispectral MR microscopy of the mouse brain. NeuroImage 27 (2) (2005)
Michel Cyr, Marc G. Caron, G. Allan Johnson, Aki Laakso
Magnetic resonance imaging at microscopic resolution reveals subtle morphological changes in a mouse model of dopaminergic hyperfunction. NeuroImage 26 (1) (2005)
Cristian T. Badea, Laurence Hedlund, Charles Wheeler, Wilfried Mai, G. Allan Johnson
Volumetric Micro-CT System for In Vivo Microscopy. ISBI (2004)
Wilfried Mai, Cristian T. Badea, Charles Wheeler, Laurence Hedlund, G. Allan Johnson
Effects of Breathing Motion On The Spatial Resolution In Microscopic Imaging Techniques of Rodents. ISBI (2004)
Ming De Lin, Cristian T. Badea, G. Allan Johnson
Optimized Radiographic Spectra for Digital Subtraction Angiography in the Mouse. ISBI (2004)
G. Allan Johnson, Gary P. Cofer, Sally L. Gewalt, Laurence Hedlund
An engineering approach to image-based phenotyping. ISBI (2002)
Arthur W. Wetzel, Stuart M. Pomerantz, Démian Nave, Walter Meixner, G. Allan Johnson
Distributed Multiuser Visualization of Time Varying Anatomical Data. AIPR (2001)
Hui H. Qiu, Gary P. Cofer, Laurence W. Hedlund, G. Allan Johnson
Automated feedback control of body temperature for small animal studies with MR microscopy. IEEE Trans. Biomed. Eng. 44 (11) (1997)
S. E. Hurlston, Gary P. Cofer, G. Allan Johnson
Optimized radiofrequency coils for increased signal-to-noise ratio in magnetic resonance microscopy. Int. J. Imaging Syst. Technol. 8 (3) (1997)