Melissa J. Davis

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 7

Top Topics

Gene Regulatory Networks

Predicting Protein

Top Venues

Briefings Bioinform.

Nucleic Acids Res.

Publications

Dharmesh D. Bhuva, Chin Wee Tan, Ning Liu, Holly J. Whitfield, Nicholas Papachristos, Samuel C. Lee, Malvika Kharbanda, Ahmed Mohamed, Melissa J. Davis
vissE: a versatile tool to identify and visualise higher-order molecular phenotypes from functional enrichment analysis. BMC Bioinform. 25 (1) (2024)
Ahmed Mohamed, Dharmesh D. Bhuva, Sam Lee, Ning Liu, Chin wee Tan, Melissa J. Davis
vissE.cloud: a webserver to visualise higher order molecular phenotypes from enrichment analysis. Nucleic Acids Res. 51 (W1) (2023)
Dhananjay Kimothi, Pravesh Biyani, James M. Hogan, Melissa J. Davis
Sequence Representations and Their Utility for Predicting Protein-Protein Interactions. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (1) (2023)
Aparna Elangovan, Yuan Li, Douglas E. V. Pires, Melissa J. Davis, Karin Verspoor
Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT. BMC Bioinform. 23 (1) (2022)
Aparna Elangovan, Yuan Li, Douglas E. V. Pires, Melissa J. Davis, Karin Verspoor
Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT. CoRR (2022)
Aparna Elangovan, Melissa J. Davis, Karin Verspoor
Assigning function to protein-protein interactions: a weakly supervised BioBERT based approach using PubMed abstracts. CoRR (2020)
Momeneh Foroutan, Dharmesh D. Bhuva, Ruqian Lyu, Kristy Horan, Joseph Cursons, Melissa J. Davis
Single sample scoring of molecular phenotypes. BMC Bioinform. 19 (1) (2018)
Anup Shah, David Chen, Akash R. Boda, Leonard J. Foster, Melissa J. Davis, Michelle M. Hill
RaftProt: mammalian lipid raft proteome database. Nucleic Acids Res. 43 (Database-Issue) (2015)
Liam G. Fearnley, Melissa J. Davis, Mark A. Ragan, Lars Keld Nielsen
Extracting reaction networks from databases-opening Pandora's box. Briefings Bioinform. 15 (6) (2014)
Stefan Maetschke, Piyush B. Madhamshettiwar, Melissa J. Davis, Mark A. Ragan
Supervised, semi-supervised and unsupervised inference of gene regulatory networks. Briefings Bioinform. 15 (2) (2014)
Piyush B. Madhamshettiwar, Stefan Maetschke, Melissa J. Davis, Mark A. Ragan
RMaNI: Regulatory Module Network Inference framework. BMC Bioinform. 14 (S-16) (2013)
Ignacio González, Kim-Anh Lê Cao, Melissa J. Davis, Sébastien Déjean
Visualising associations between paired 'omics' data sets. BioData Min. 5 (2012)
Ralph Patrick, Kim-Anh Lê Cao, Melissa J. Davis, Bostjan Kobe, Mikael Bodén
Mapping the stabilome: a novel computational method for classifying metabolic protein stability. BMC Syst. Biol. 6 (2012)
Stefan Maetschke, Martin Simonsen, Melissa J. Davis, Mark A. Ragan
Gene Ontology-driven inference of protein-protein interactions using inducers. Bioinform. 28 (1) (2012)
Chenwei Wang, Alperen Taciroglu, Stefan Maetschke, Colleen C. Nelson, Mark A. Ragan, Melissa J. Davis
mCOPA: analysis of heterogeneous features in cancer expression data. J. Clin. Bioinform. 2 (2012)
Melissa J. Davis, Muhammad Shoaib B. Sehgal, Mark A. Ragan
Automatic, context-specific generation of Gene Ontology slims. BMC Bioinform. 11 (2010)
Joo-Young Choi, Melissa J. Davis, Andrew F. Newman, Mark A. Ragan
A Semantic Web Ontology for Small Molecules and Their Biological Targets. J. Chem. Inf. Model. 50 (5) (2010)
Chang Shin, Simon Wong, Melissa J. Davis, Mark A. Ragan
Protein-protein interaction as a predictor of subcellular location. BMC Syst. Biol. 3 (2009)
Melissa J. Davis, Andrew F. Newman, Imran Khan, Jane Hunter, Mark A. Ragan
Integrating Hierarchical Controlled Vocabularies With OWL Ontology: A Case Study from the Domain of Molecular Interactions. APBC (2008)
J. Lynn Fink, Rajith N. Aturaliya, Melissa J. Davis, Fasheng Zhang, Kelly Hanson, Melvena S. Teasdale, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Rohan D. Teasdale
LOCATE: a mouse protein subcellular localization database. Nucleic Acids Res. 34 (Database-Issue) (2006)
Melissa J. Davis, Fasheng Zhang, Zheng Yuan, Rohan D. Teasdale
MemO: A Consensus Approach to the Annotation of a Protein's Membrane Organization. Silico Biol. 6 (5) (2006)