Kim-Anh Lê Cao

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 14

Top Topics

Query Decomposition

Statistics And Machine Learning

Data Integration

Top Venues

Briefings Bioinform.

PLoS Comput. Biol.

Publications

Babak Shaban, Maria Mar del Quiroga, Robert Turnbull, Edoardo Tescari, Kim-Anh Lê Cao, Heroen Verbruggen
MetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional and Taxonomic Analysis. J. Open Source Softw. 8 (83) (2023)
Yiwen Wang, Kim-Anh Lê Cao
PLSDA-batch: a multivariate framework to correct for batch effects in microbiome data. Briefings Bioinform. 24 (2) (2023)
Antoine Bodein, Marie-Pier Scott-Boyer, Olivier Périn, Kim-Anh Lê Cao, Arnaud Droit
timeOmics: an R package for longitudinal multi-omics data integration. Bioinform. 38 (2) (2022)
Yidi Deng, Jarny Choi, Kim-Anh Lê Cao
Sincast: a computational framework to predict cell identities in single-cell transcriptomes using bulk atlases as references. Briefings Bioinform. 23 (3) (2022)
Saritha Kodikara, Susan Ellul, Kim-Anh Lê Cao
Statistical challenges in longitudinal microbiome data analysis. Briefings Bioinform. 23 (4) (2022)
Tyrone Chen, Al J. Abadi, Kim-Anh Lê Cao, Sonika Tyagi
multiomics: A user-friendly multi-omics data harmonisation R pipeline. F1000Research 10 (2021)
Tyrone Chen, Melcy Philip, Kim-Anh Lê Cao, Sonika Tyagi
A multi-modal data harmonisation approach for discovery of COVID-19 drug targets. Briefings Bioinform. 22 (6) (2021)
Paul W. Angel, Nadia Rajab, Yidi Deng, Chris M. Pacheco, Tyrone Chen, Kim-Anh Lê Cao, Jarny Choi, Christine A. Wells
A simple, scalable approach to building a cross-platform transcriptome atlas. PLoS Comput. Biol. 16 (9) (2020)
Yiwen Wang, Kim-Anh Lê Cao
Managing batch effects in microbiome data. Briefings Bioinform. 21 (6) (2020)
Amrit Singh, Casey P. Shannon, Benoît Gautier, Florian Rohart, Michaël Vacher, Scott J. Tebbutt, Kim-Anh Lê Cao
DIABLO: an integrative approach for identifying key molecular drivers from multi-omics assays. Bioinform. 35 (17) (2019)
Florian Rohart, Aida Eslami, Nicholas Matigian, Stéphanie Bougeard, Kim-Anh Lê Cao
MINT: a multivariate integrative method to identify reproducible molecular signatures across independent experiments and platforms. BMC Bioinform. 18 (1) (2017)
Florian Rohart, Benoît Gautier, Amrit Singh, Kim-Anh Lê Cao
mixOmics: An R package for 'omics feature selection and multiple data integration. PLoS Comput. Biol. 13 (11) (2017)
Ralph Patrick, Bostjan Kobe, Kim-Anh Lê Cao, Mikael Bodén
PhosphoPICK-SNP: quantifying the effect of amino acid variants on protein phosphorylation. Bioinform. 33 (12) (2017)
Ralph Patrick, Kim-Anh Lê Cao, Bostjan Kobe, Mikael Bodén
PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation events. Bioinform. 31 (3) (2015)
Fangzhou Yao, Jeff Coquery, Kim-Anh Lê Cao
Independent Principal Component Analysis for biologically meaningful dimension reduction of large biological data sets. BMC Bioinform. 13 (2012)
Ignacio González, Kim-Anh Lê Cao, Melissa J. Davis, Sébastien Déjean
Visualising associations between paired 'omics' data sets. BioData Min. 5 (2012)
Ralph Patrick, Kim-Anh Lê Cao, Melissa J. Davis, Bostjan Kobe, Mikael Bodén
Mapping the stabilome: a novel computational method for classifying metabolic protein stability. BMC Syst. Biol. 6 (2012)
Benoit Liquet, Kim-Anh Lê Cao, Hakim Hocini, Rodolphe Thiébaut
A novel approach for biomarker selection and theintegration of repeated measures experiments from two assays. BMC Bioinform. 13 (2012)
Kim-Anh Lê Cao, Simon Boitard, Philippe Besse
Sparse PLS Discriminant Analysis: biologically relevant feature selection and graphical displays for multiclass problems. BMC Bioinform. 12 (2011)
Denis C. Bauer, Kai Willadsen, Fabian A. Buske, Kim-Anh Lê Cao, Timothy L. Bailey, Graham Dellaire, Mikael Bodén
Sorting the nuclear proteome. Bioinform. 27 (13) (2011)
Kim-Anh Lê Cao, Emmanuelle Meugnier, Geoffrey J. McLachlan
Integrative mixture of experts to combine clinical factors and gene markers. Bioinform. 26 (9) (2010)
Kim-Anh Lê Cao, Agnès Bonnet, Sébastien Gadat
Multiclass classification and gene selection with a stochastic algorithm. Comput. Stat. Data Anal. 53 (10) (2009)
Kim-Anh Lê Cao, Ignacio González, Sébastien Déjean
integrOmics: an R package to unravel relationships between two omics datasets. Bioinform. 25 (21) (2009)
Kim-Anh Lê Cao, Pascal G. P. Martin, Christèle Robert-Granié, Philippe Besse
Sparse canonical methods for biological data integration: application to a cross-platform study. BMC Bioinform. 10 (2009)