Mikael Bodén

ORCID

Publication Activity (10 Years)

Years Active: 1993-2022
Publications (10 Years): 11

Top Venues

University of Exeter, UK (PHD)

Education History

University of Exeter, UK

PHD

Publications

Gabriel Foley, Ariane Mora, Connie M. Ross, Scott Bottoms, Leander Sützl, Marnie L. Lamprecht, Julian Zaugg, Alexandra Essebier, Brad Balderson, Rhys Newell, Raine E. S. Thomson, Bostjan Kobe, Ross T. Barnard, Luke Guddat, Gerhard Schenk, Jörg Carsten, Yosephine Gumulya, Burkhard Rost, Dietmar Haltrich, Volker Sieber, Elizabeth M. J. Gillam, Mikael Bodén
Engineering indel and substitution variants of diverse and ancient enzymes using Graphical Representation of Ancestral Sequence Predictions (GRASP). PLoS Comput. Biol. 18 (10) (2022)
Timothy O'Connor, Charles E. Grant, Mikael Bodén, Timothy L. Bailey
T-Gene: improved target gene prediction. Bioinform. 36 (12) (2020)
Maria Littmann, Tatyana Goldberg, Sebastian Seitz, Mikael Bodén, Burkhard Rost
Correction to: Detailed prediction of protein sub-nuclear localization. BMC Bioinform. 20 (1) (2019)
Maria Littmann, Tatyana Goldberg, Sebastian Seitz, Mikael Bodén, Burkhard Rost
Detailed prediction of protein sub-nuclear localization. BMC Bioinform. 20 (1) (2019)
Stephen J. Fletcher, Mikael Bodén, Neena Mitter, Bernard J. Carroll
SCRAM: a pipeline for fast index-free small RNA read alignment and visualization. Bioinform. 34 (15) (2018)
Julian Zaugg, Yosephine Gumulya, Mikael Bodén, Alan E. Mark, Alpeshkumar K. Malde
Effect of Binding on Enantioselectivity of Epoxide Hydrolase. J. Chem. Inf. Model. 58 (3) (2018)
Michael Bernhofer, Tatyana Goldberg, Silvana Wolf, Mohamed Ahmed, Julian Zaugg, Mikael Bodén, Burkhard Rost
NLSdb - major update for database of nuclear localization signals and nuclear export signals. Nucleic Acids Res. 46 (Database-Issue) (2018)
Ralph Patrick, Bostjan Kobe, Kim-Anh Lê Cao, Mikael Bodén
PhosphoPICK-SNP: quantifying the effect of amino acid variants on protein phosphorylation. Bioinform. 33 (12) (2017)
Julian Zaugg, Yosephine Gumulya, Alpeshkumar K. Malde, Mikael Bodén
Learning epistatic interactions from sequence-activity data to predict enantioselectivity. J. Comput. Aided Mol. Des. 31 (12) (2017)
Minh Duc Cao, Sureshkumar Balasubramanian, Mikael Bodén
Sequencing technologies and tools for short tandem repeat variation detection. Briefings Bioinform. 16 (2) (2015)
Ralph Patrick, Kim-Anh Lê Cao, Bostjan Kobe, Mikael Bodén
PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation events. Bioinform. 31 (3) (2015)
Jakub Mazgut, Peter Tiño, Mikael Bodén, Hong Yan
Dimensionality reduction and topographic mapping of binary tensors. Pattern Anal. Appl. 17 (3) (2014)
Ahmed M. Mehdi, Muhammad Shoaib B. Sehgal, Bostjan Kobe, Timothy L. Bailey, Mikael Bodén
DLocalMotif: a discriminative approach for discovering local motifs in protein sequences. Bioinform. 29 (1) (2013)
Patricio Oyarzún, Jonathan J. Ellis, Mikael Bodén, Bostjan Kobe
PREDIVAC: CD4+ T-cell epitope prediction for vaccine design that covers 95% of HLA class II DR protein diversity. BMC Bioinform. 14 (2013)
Kai Willadsen, Nurul Mohamad, Mikael Bodén
NSort/DB: An Intranuclear Compartment Protein Database. Genom. Proteom. Bioinform. 10 (4) (2012)
Praveen K. Madala, David P. Fairlie, Mikael Bodén
Matching Cavities in G Protein-Coupled Receptors to Infer Ligand-Binding Sites. J. Chem. Inf. Model. 52 (5) (2012)
Ralph Patrick, Kim-Anh Lê Cao, Melissa J. Davis, Bostjan Kobe, Mikael Bodén
Mapping the stabilome: a novel computational method for classifying metabolic protein stability. BMC Syst. Biol. 6 (2012)
Ahmed M. Mehdi, Muhammad Shoaib B. Sehgal, Bostjan Kobe, Timothy L. Bailey, Mikael Bodén
A probabilistic model of nuclear import of proteins. Bioinform. 27 (9) (2011)
Denis C. Bauer, Kai Willadsen, Fabian A. Buske, Kim-Anh Lê Cao, Timothy L. Bailey, Graham Dellaire, Mikael Bodén
Sorting the nuclear proteome. Bioinform. 27 (13) (2011)
Jakub Mazgut, Peter Tiño, Mikael Bodén, Hong Yan
Multilinear Decomposition and Topographic Mapping of Binary Tensors. ICANN (1) (2010)
Mikael Bodén, Graham Dellaire, Kevin Burrage, Timothy L. Bailey
A Bayesian Network Model of Proteins' Association with Promyelocytic Leukemia (PML) Nuclear Bodies. J. Comput. Biol. 17 (4) (2010)
Timothy L. Bailey, Mikael Bodén, Tom Whitington, Philip Machanick
The value of position-specific priors in motif discovery using MEME. BMC Bioinform. 11 (2010)
Liwen You, Vladimir Brusic, Marcus Gallagher, Mikael Bodén
Using Gaussian Process with Test Rejection to Detect T-Cell Epitopes in Pathogen Genomes. IEEE ACM Trans. Comput. Biol. Bioinform. 7 (4) (2010)
Denis C. Bauer, Fabian A. Buske, Timothy L. Bailey, Mikael Bodén
Predicting SUMOylation sites in developmental transcription factors of Drosophila melanogaster. Neurocomputing 73 (13-15) (2010)
Fabian A. Buske, Mikael Bodén, Denis C. Bauer, Timothy L. Bailey
Assigning roles to DNA regulatory motifs using comparative genomics. Bioinform. 26 (7) (2010)
Nurul Mohamad, Mikael Bodén
The proteins of intra-nuclear bodies: a data-driven analysis of sequence, interaction and expression. BMC Syst. Biol. 4 (2010)
Fabian A. Buske, Stefan Maetschke, Mikael Bodén
It's about time: Signal recognition in staged models of protein translocation. Pattern Recognit. 42 (4) (2009)
Timothy L. Bailey, Mikael Bodén, Fabian A. Buske, Martin C. Frith, Charles E. Grant, Luca Clementi, Jingyuan Ren, Wilfred W. Li, William Stafford Noble
MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Isye Arieshanti, Mikael Bodén, Stefan Maetschke, Fabian A. Buske
Detecting sequence and structure homology via an integrative kernel: A case-study in recognizing enzymes. CIBCB (2009)
Mikael Bodén
Predicting Nucleolar Proteins Using Support-Vector Machines. APBC (2008)
Mikael Bodén, Rohan D. Teasdale
Determining Nucleolar Association from Sequence by Leveraging Protein-Protein Interactions. J. Comput. Biol. 15 (3) (2008)
Denis C. Bauer, Fabian A. Buske, Mikael Bodén
Predicting SUMOylation Sites. PRIB (2008)
Jakkarin Suksawatchon, Chidchanok Lursinsap, Mikael Bodén
Computing the Reversal Distance between genomes in the Presence of Multi-gene Families via Binary Integer Programming. J. Bioinform. Comput. Biol. 5 (1) (2007)
Stefan Maetschke, Marcus Gallagher, Mikael Bodén
A Comparison of Sequence Kernels for Localization Prediction of Transmembrane Proteins. CIBCB (2007)
Liwen You, Ping Zhang, Mikael Bodén, Vladimir Brusic
Understanding Prediction Systems for HLA-Binding Peptides and T-Cell Epitope Identification. PRIB (2007)
Marie Bodén, Mikael Bodén
Evolving spelling exercises to suit individual student needs. Appl. Soft Comput. 7 (1) (2007)
Denis C. Bauer, Mikael Bodén, Ricarda Thier, Elizabeth M. Gillam
STAR: predicting recombination sites from amino acid sequence. BMC Bioinform. 7 (2006)
Mikael Bodén, John Hawkins
Evolving discriminative motifs for recognizing proteins imported to the peroxisome via the PTS2 pathway. IEEE Congress on Evolutionary Computation (2006)
Mikael Bodén, Timothy L. Bailey
Identifying sequence regions undergoing conformational change via predicted continuum secondary structure. Bioinform. 22 (15) (2006)
Mikael Bodén, Zheng Yuan, Timothy L. Bailey
Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures. BMC Bioinform. 7 (2006)
Jakkarin Suksawatchon, Chidchanok Lursinsap, Mikael Bodén
Heuristic Algorithm for Computing Reversal Distance with MultiGene Families via Binary Integer Programming. CIBCB (2005)
John Hawkins, Mikael Bodén
The Applicability of Recurrent Neural Networks for Biological Sequence Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. 2 (3) (2005)
Mikael Bodén, John Hawkins
Prediction of subcellular localization using sequence-biased recurrent networks. Bioinform. 21 (10) (2005)
Mark Wakabayashi, John Hawkins, Stefan Maetschke, Mikael Bodén
Exploiting Sequence Dependencies in the Prediction of Peroxisomal Proteins. IDEAL (2005)
Mikael Bodén, John Hawkins
Improved access to sequential motifs: a note on the architectural bias of recurrent networks. IEEE Trans. Neural Networks 16 (2) (2005)
Stefan Maetschke, Michael Towsey, Mikael Bodén
BLOMAP: An encoding of amino acids which improves signal peptide cleavage site prediction. APBC (2005)
John Hawkins, Mikael Bodén
Predicting Peroxisomal Proteins. CIBCB (2005)
Mikael Bodén, John Hawkins
Detecting residues in targeting peptides. APBC (2005)
Denis C. Bauer, Mikael Bodén, Ricarda Thier, Zheng Yuan
Predicting Structural Disruption of Proteins Caused by Crossover (based on Amino Acid Sequence). CIBCB (2005)
Mikael Bodén
Generalization by symbolic abstraction in cascaded recurrent networks. Neurocomputing 57 (2004)
Mikael Bodén
Using evolutionary noise to improve prediction of rapidly evolving targeting peptides. IEEE Congress on Evolutionary Computation (2003)
Mikael Bodén, Alan D. Blair
Learning the Dynamics of Embedded Clauses. Appl. Intell. 19 (1-2) (2003)
Mikael Bodén, Janet Wiles
On learning context-free and context-sensitive languages. IEEE Trans. Neural Networks 13 (2) (2002)
Mikael Bodén
Generalization by structural properties from sparse nested symbolic data. ESANN (2002)
Mikael Bodén, Janet Wiles
Context-free and context-sensitive dynamics in recurrent neural networks. Connect. Sci. 12 (3-4) (2000)
Mikael Bodén, Henrik Jacobsson, Tom Ziemke
Evolving context-free language predictors. GECCO (2000)
Mikael Bodén, Lars Niklasson
Semantic systematicity and context in connectionist networks. Connect. Sci. 12 (2) (2000)
Mikael Bodén
A Connectionist Variation of Inheritance. ICANN (1996)
Mikael Bodén, Lars Niklasson
Editorial. Artif. Intell. Rev. 7 (5) (1993)

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Publication Activity (10 Years)

Top Topics

Top Venues

Mikael Bodén