Lars Keld Nielsen

Publication Activity (10 Years)

Years Active: 2014-2022
Publications (10 Years): 5

Top Topics

Search Algorithm

Linear Programming

Top Venues

PLoS Comput. Biol.

Briefings Bioinform.

BMC Syst. Biol.

Publications

Verónica S. Martínez, Pedro A. Saa, Jason Jooste, Kanupriya Tiwari, Lake-Ee Quek, Lars Keld Nielsen
The topology of genome-scale metabolic reconstructions unravels independent modules and high network flexibility. PLoS Comput. Biol. 18 (6) (2022)
Vishnuvardhan Mahamkali, Tim McCubbin, Moritz Emanuel Beber, Elad Noor, Esteban Marcellin, Lars Keld Nielsen
multiTFA: a Python package for multi-variate thermodynamics-based flux analysis. Bioinform. 37 (18) (2021)
Pedro Saa, Lars Keld Nielsen
Fast-SNP: a fast matrix pre-processing algorithm for efficient loopless flux optimization of metabolic models. Bioinform. 32 (24) (2016)
Pedro Saa, Lars Keld Nielsen
ll-ACHRB: a scalable algorithm for sampling the feasible solution space of metabolic networks. Bioinform. 32 (15) (2016)
Pedro Saa, Lars Keld Nielsen
A General Framework for Thermodynamically Consistent Parameterization and Efficient Sampling of Enzymatic Reactions. PLoS Comput. Biol. 11 (4) (2015)
Liam G. Fearnley, Melissa J. Davis, Mark A. Ragan, Lars Keld Nielsen
Extracting reaction networks from databases-opening Pandora's box. Briefings Bioinform. 15 (6) (2014)
Lake-Ee Quek, Lars Keld Nielsen
A depth-first search algorithm to compute elementary flux modes by linear programming. BMC Syst. Biol. 8 (2014)
Liam G. Fearnley, Mark A. Ragan, Lars Keld Nielsen
Towards a Large Integrated Model of Signal Transduction and Gene Regulation Events in Mammalian Cells. BIOINFORMATICS (2014)