Matthieu-P. Schapranow

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 28

Top Topics

Clinical Practice Guidelines

Inter Annotator Agreement

Top Venues

Briefings Bioinform.

CLEF (Working Notes)

Publications

Florian Borchert, Ignacio Llorca, Matthieu-P. Schapranow
Improving biomedical entity linking for complex entity mentions with LLM-based text simplification. Database J. Biol. Databases Curation 2024 (2024)
Ignacio Llorca, Florian Borchert, Matthieu-P. Schapranow
A Meta-dataset of German Medical Corpora: Harmonization of Annotations and Cross-corpus NER Evaluation. ClinicalNLP@ACL (2023)
Florian Borchert, Ignacio Llorca, Roland Roller, Bert Arnrich, Matthieu-P. Schapranow
xMEN: A Modular Toolkit for Cross-Lingual Medical Entity Normalization. CoRR (2023)
Sandro Steinwand, Florian Borchert, Silvia Winkler, Matthieu-P. Schapranow
GGTWEAK: Gene Tagging with Weak Supervision for German Clinical Text. AIME (2023)
Florian Borchert, Ignacio Llorca, Matthieu-P. Schapranow
Cross-Lingual Candidate Retrieval and Re-ranking for Biomedical Entity Linking. CLEF (2023)
Matthieu-P. Schapranow, Florian Borchert, Nina Bougatf, Hauke Hund, Roland Eils
Software-Tool Support for Collaborative, Virtual, Multi-Site Molecular Tumor Boards. SN Comput. Sci. 4 (4) (2023)
Niklas Kammer, Florian Borchert, Silvia Winkler, Gerard de Melo, Matthieu-P. Schapranow
Resolving Elliptical Compounds in German Medical Text. BioNLP@ACL (2023)
Florian Borchert, Christina Lohr, Luise Modersohn, Jonas Witt, Thomas Langer, Markus Follmann, Matthias Gietzelt, Bert Arnrich, Udo Hahn, Matthieu-P. Schapranow
GGPONC 2.0 - The German Clinical Guideline Corpus for Oncology: Curation Workflow, Annotation Policy, Baseline NER Taggers. LREC (2022)
Florian Borchert, Matthieu-P. Schapranow
HPI-DHC @ BioASQ DisTEMIST: Spanish Biomedical Entity Linking with Pre-trained Transformers and Cross-lingual Candidate Retrieval. CLEF (Working Notes) (2022)
Harry Freitas Da Cruz, Boris Pfahringer, Tom Martensen, Frederic Schneider, Alexander Meyer, Erwin P. Böttinger, Matthieu-P. Schapranow
Using interpretability approaches to update "black-box" clinical prediction models: an external validation study in nephrology. Artif. Intell. Medicine 111 (2021)
Florian Borchert, Andreas Mock, Aurelie Tomczak, Jonas Hügel, Samer Alkarkoukly, Alexander Knurr, Anna-Lena Volckmar, Albrecht Stenzinger, Peter Schirmacher, Jürgen Debus, Dirk Jäger, Thomas Longerich, Stefan Fröhling, Roland Eils, Nina Bougatf, Ulrich Sax, Matthieu-P. Schapranow
Knowledge bases and software support for variant interpretation in precision oncology. Briefings Bioinform. 22 (6) (2021)
Florian Borchert, Laura Meister, Thomas Langer, Markus Follmann, Bert Arnrich, Matthieu-P. Schapranow
Controversial Trials First: Identifying Disagreement Between Clinical Guidelines and New Evidence. AMIA (2021)
Florian Borchert, Andreas Mock, Aurelie Tomczak, Jonas Hügel, Samer Alkarkoukly, Alexander Knurr, Anna-Lena Volckmar, Albrecht Stenzinger, Peter Schirmacher, Jürgen Debus, Dirk Jäger, Thomas Longerich, Stefan Fröhling, Roland Eils, Nina Bougatf, Ulrich Sax, Matthieu-P. Schapranow
Knowledge bases and software support for variant interpretation in precision oncology. Briefings Bioinform. 22 (6) (2021)
Aadil Rasheed, Florian Borchert, Lasse Kohlmeyer, Richard Henkenjohann, Matthieu-P. Schapranow
A Comparison of Concept Embeddings for German Clinical Corpora. BIBM (2021)
Richard Henkenjohann, Benjamin Bergner, Florian Borchert, Nina Bougatf, Hauke Hund, Roland Eils, Matthieu-P. Schapranow
An Engineering Approach Towards Multi-site Virtual Molecular Tumor Board Software. IHAW (2021)
Florian Borchert, Christina Lohr, Luise Modersohn, Thomas Langer, Markus Follmann, Jan-Philipp Sachs, Udo Hahn, Matthieu-P. Schapranow
GGPONC: A Corpus of German Medical Text with Rich Metadata Based on Clinical Practice Guidelines. LOUHI@EMNLP (2020)
Florian Borchert, Christina Lohr, Luise Modersohn, Thomas Langer, Markus Follmann, Jan-Philipp Sachs, Udo Hahn, Matthieu-P. Schapranow
GGPONC: A Corpus of German Medical Text with Rich Metadata Based on Clinical Practice Guidelines. CoRR (2020)
Harry Freitas Da Cruz, Benjamin Bergner, Orhan Konak, Frederic Schneider, Philipp Bode, Conrad Lempert, Matthieu-P. Schapranow
MORPHER - A Platform to Support Modeling of Outcome and Risk Prediction in Health Research. BIBE (2019)
Orhan Konak, Harry Freitas Da Cruz, Marvin Thiele, David Golla, Matthieu-P. Schapranow
An Information and Communication Platform Supporting Analytics for Elderly Care. ICT4AWE (2019)
Harry Freitas Da Cruz, Frederic Schneider, Matthieu-P. Schapranow
Prediction of Acute Kidney Injury in Cardiac Surgery Patients: Interpretation using Local Interpretable Model-agnostic Explanations. HEALTHINF (2019)
Tamara Slosarek, Milena Kraus, Matthieu-P. Schapranow, Erwin P. Böttinger
Qualitative Comparison of Selected Indel Detection Methods for RNA-Seq Data. IWBBIO (1) (2019)
Harry Freitas Da Cruz, Boris Pfahringer, Frederic Schneider, Alexander Meyer, Matthieu-P. Schapranow
External Validation of a "Black-Box" Clinical Predictive Model in Nephrology: Can Interpretability Methods Help Illuminate Performance Differences? AIME (2019)
Milena Kraus, Guenter Hesse, Tamara Slosarek, Marius Danner, Ajay Kesar, Akshay Bhushan, Matthieu-P. Schapranow
DEAME - Differential Expression Analysis Made Easy. Poly/DMAH@VLDB (2018)
Matthieu-P. Schapranow, Milena Kraus, Marius Danner, Hasso Plattner
IMDBfs: Bridging the gap between in-memory database technology and file-based tools for life sciences. BIBM (2016)
Matthieu-P. Schapranow, Matthias Uflacker, Murat Sariyar, Sebastian C. Semler, Johannes Klaus Fichte, Dietmar Schielke, Kismet Ekinci, Thomas Zahn
Towards an integrated health research process: A cloud-based approach. IEEE BigData (2016)
Matthieu-P. Schapranow, Milena Kraus, Cindy Perscheid, Cornelius Bock, Franz Liedke, Hasso Plattner
The Medical Knowledge Cockpit: Real-time analysis of big medical data enabling precision medicine. BIBM (2015)
Cindy Fähnrich, Matthieu-P. Schapranow, Hasso Plattner
Facing the genome data deluge: efficiently identifying genetic variants with in-memory database technology. SAC (2015)
Matthieu-P. Schapranow, Cindy Perscheid, Alf Wachsmann, Martin Siegert, Cornelius Bock, Friedrich Horschig, Franz Liedke, Janos Brauer, Hasso Plattner
A Federated In-memory Database System for Life Sciences. BIRTE (Revised Selected Papers) (2015)
Konrad Herbst, Cindy Fähnrich, Mariana L. Neves, Matthieu-P. Schapranow
Applying In-Memory Technology for Automatic Template Filling in the Clinical Domain. CLEF (Working Notes) (2014)
Matthieu-P. Schapranow, Konrad Klinghammer, Cindy Fähnrich, Hasso Plattner
In-memory technology enables interactive drug response analysis. Healthcom (2014)
Cindy Fähnrich, Matthieu-P. Schapranow, Hasso Plattner
Towards integrating the detection of genetic variants into an in-memory database. IEEE BigData (2014)
Matthieu-P. Schapranow, Hasso Plattner
HIG - An in-memory database platform enabling real-time analyses of genome data. IEEE BigData (2013)
Matthieu-P. Schapranow, Jürgen Müller, Alexander Zeier, Hasso Plattner
Costs of authentic pharmaceuticals: research on qualitative and quantitative aspects of enabling anti-counterfeiting in RFID-aided supply chains. Pers. Ubiquitous Comput. 16 (3) (2012)
Matthieu-P. Schapranow, Alexander Zeier, Hasso Plattner
A Formal Model for Enabling RFID in Pharmaceutical Supply Chains. HICSS (2011)
Matthieu-P. Schapranow, Alexander Zeier, Hasso Plattner
Security Extensions for Improving Data Security of Event Repositories in EPCglobal Networks. EUC (2011)
Matthieu-P. Schapranow, Ralph Kühne, Alexander Zeier, Hasso Plattner
Enabling real-time charging for smart grid infrastructures using in-memory databases. LCN (2010)
Matthieu-P. Schapranow, Alexander Zeier, Hasso Plattner
A Dynamic Mutual RFID Authentication Model Preventing Unauthorized Third Party Access. NSS (2010)
Matthieu-P. Schapranow, Jürgen Müller, Alexander Zeier, Hasso Plattner
RFID Event Data Processing: An Architecture for Storing and Searching. IWRT (2010)
Matthieu-P. Schapranow, Jens Krüger, Vadym Borovskiy, Alexander Zeier, Hasso Plattner
Data Loading and Caching Strategies in Service-Oriented Enterprise Applications. SERVICES I (2009)