Florian Borchert

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 21

Top Topics

Clinical Practice

Top Venues

Briefings Bioinform.

Publications

Florian Borchert, Ignacio Llorca, Matthieu-P. Schapranow
Improving biomedical entity linking for complex entity mentions with LLM-based text simplification. Database J. Biol. Databases Curation 2024 (2024)
Keno K. Bressem, Jens-Michalis Papaioannou, Paul Grundmann, Florian Borchert, Lisa C. Adams, Leonhard Liu, Felix Busch, Lina Xu, Jan P. Loyen, Stefan Markus Niehues, Moritz Augustin, Lennart Grosser, Marcus R. Makowski, Hugo J. W. L. Aerts, Alexander Löser
medBERT.de: A comprehensive German BERT model for the medical domain. Expert Syst. Appl. 237 (Part C) (2024)
Ignacio Llorca, Florian Borchert, Matthieu-P. Schapranow
A Meta-dataset of German Medical Corpora: Harmonization of Annotations and Cross-corpus NER Evaluation. ClinicalNLP@ACL (2023)
Florian Borchert, Ignacio Llorca, Roland Roller, Bert Arnrich, Matthieu-P. Schapranow
xMEN: A Modular Toolkit for Cross-Lingual Medical Entity Normalization. CoRR (2023)
Julian Hugo, Susanne Ibing, Florian Borchert, Jan-Philipp Sachs, Judy Cho, Ryan C. Ungaro, Erwin P. Böttinger
Machine Learning Based Prediction of Incident Cases of Crohn's Disease Using Electronic Health Records from a Large Integrated Health System. AIME (2023)
Sandro Steinwand, Florian Borchert, Silvia Winkler, Matthieu-P. Schapranow
GGTWEAK: Gene Tagging with Weak Supervision for German Clinical Text. AIME (2023)
Nektarios Ladas, Florian Borchert, Stefan Franz, Alina Rehberg, Natalia Strauch, Kim Katrin Sommer, Michael Marschollek, Matthias Gietzelt
Programming techniques for improving rule readability for rule-based information extraction natural language processing pipelines of unstructured and semi-structured medical texts. Health Informatics J. 29 (2) (2023)
Florian Borchert, Ignacio Llorca, Matthieu-P. Schapranow
Cross-Lingual Candidate Retrieval and Re-ranking for Biomedical Entity Linking. CLEF (2023)
Matthieu-P. Schapranow, Florian Borchert, Nina Bougatf, Hauke Hund, Roland Eils
Software-Tool Support for Collaborative, Virtual, Multi-Site Molecular Tumor Boards. SN Comput. Sci. 4 (4) (2023)
Keno K. Bressem, Jens-Michalis Papaioannou, Paul Grundmann, Florian Borchert, Lisa C. Adams, Leonhard Liu, Felix Busch, Lina Xu, Jan P. Loyen, Stefan Markus Niehues, Moritz Augustin, Lennart Grosser, Marcus R. Makowski, Hugo J. W. L. Aerts, Alexander Löser
MEDBERT.de: A Comprehensive German BERT Model for the Medical Domain. CoRR (2023)
Danielly F. O. de Paula, Florian Borchert, Ariane Sasso, Falk Uebernickel
Understanding emotions in the context of IT-based self-monitoring. CoRR (2023)
Niklas Kammer, Florian Borchert, Silvia Winkler, Gerard de Melo, Matthieu-P. Schapranow
Resolving Elliptical Compounds in German Medical Text. BioNLP@ACL (2023)
Florian Borchert, Christina Lohr, Luise Modersohn, Jonas Witt, Thomas Langer, Markus Follmann, Matthias Gietzelt, Bert Arnrich, Udo Hahn, Matthieu-P. Schapranow
GGPONC 2.0 - The German Clinical Guideline Corpus for Oncology: Curation Workflow, Annotation Policy, Baseline NER Taggers. LREC (2022)
Florian Borchert, Matthieu-P. Schapranow
HPI-DHC @ BioASQ DisTEMIST: Spanish Biomedical Entity Linking with Pre-trained Transformers and Cross-lingual Candidate Retrieval. CLEF (Working Notes) (2022)
Florian Borchert, Andreas Mock, Aurelie Tomczak, Jonas Hügel, Samer Alkarkoukly, Alexander Knurr, Anna-Lena Volckmar, Albrecht Stenzinger, Peter Schirmacher, Jürgen Debus, Dirk Jäger, Thomas Longerich, Stefan Fröhling, Roland Eils, Nina Bougatf, Ulrich Sax, Matthieu-P. Schapranow
Knowledge bases and software support for variant interpretation in precision oncology. Briefings Bioinform. 22 (6) (2021)
Florian Borchert, Laura Meister, Thomas Langer, Markus Follmann, Bert Arnrich, Matthieu-P. Schapranow
Controversial Trials First: Identifying Disagreement Between Clinical Guidelines and New Evidence. AMIA (2021)
Florian Borchert, Andreas Mock, Aurelie Tomczak, Jonas Hügel, Samer Alkarkoukly, Alexander Knurr, Anna-Lena Volckmar, Albrecht Stenzinger, Peter Schirmacher, Jürgen Debus, Dirk Jäger, Thomas Longerich, Stefan Fröhling, Roland Eils, Nina Bougatf, Ulrich Sax, Matthieu-P. Schapranow
Knowledge bases and software support for variant interpretation in precision oncology. Briefings Bioinform. 22 (6) (2021)
Aadil Rasheed, Florian Borchert, Lasse Kohlmeyer, Richard Henkenjohann, Matthieu-P. Schapranow
A Comparison of Concept Embeddings for German Clinical Corpora. BIBM (2021)
Richard Henkenjohann, Benjamin Bergner, Florian Borchert, Nina Bougatf, Hauke Hund, Roland Eils, Matthieu-P. Schapranow
An Engineering Approach Towards Multi-site Virtual Molecular Tumor Board Software. IHAW (2021)
Florian Borchert, Christina Lohr, Luise Modersohn, Thomas Langer, Markus Follmann, Jan-Philipp Sachs, Udo Hahn, Matthieu-P. Schapranow
GGPONC: A Corpus of German Medical Text with Rich Metadata Based on Clinical Practice Guidelines. LOUHI@EMNLP (2020)
Florian Borchert, Christina Lohr, Luise Modersohn, Thomas Langer, Markus Follmann, Jan-Philipp Sachs, Udo Hahn, Matthieu-P. Schapranow
GGPONC: A Corpus of German Medical Text with Rich Metadata Based on Clinical Practice Guidelines. CoRR (2020)