Natalia Ivanova

Publication Activity (10 Years)

Years Active: 1997-2024
Publications (10 Years): 8

Top Topics

Genomic Sequences

Manufacturing Systems

Escherichia Coli

Top Venues

Nucleic Acids Res.

Int. J. Manuf. Technol. Manag.

Publications

Holly R. Steach, Siddharth Viswanath, Yixuan He, Xitong Zhang, Natalia Ivanova, Matthew J. Hirn, Michael Perlmutter, Smita Krishnaswamy
Inferring Metabolic States from Single Cell Transcriptomic Data via Geometric Deep Learning. RECOMB (2024)
I-Min A. Chen, Ken Chu, Krishnaveni Palaniappan, Anna Ratner, Jinghua Huang, Marcel Huntemann, Patrick Hajek, Stephan Ritter, Cody Webb, Dongying Wu, Neha Varghese, T. B. K. Reddy, Supratim Mukherjee, Galina Ovchinnikova, Matt Nolan, Rekha Seshadri, Simon Roux, Axel Visel, Tanja Woyke, Emiley A. Eloe-Fadrosh, Nikos Kyrpides, Natalia Ivanova
The IMG/M data management and analysis system v.7: content updates and new features. Nucleic Acids Res. 51 (D1) (2023)
Joan Carles Pons, A. David Páez-Espino, Gabriel Riera, Natalia Ivanova, Nikos Kyrpides, Mercè Llabrés
VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families. Bioinform. 37 (13) (2021)
Dmitry Drozin, Sergey Sozykin, Natalia Ivanova, Tatiana Olenchikova, Tatyana Krupnova, Natalia Krupina, Viacheslav Avdin
Kinetic calculation: Software tool for determining the kinetic parameters of the thermal decomposition process using the Vyazovkin Method. SoftwareX 11 (2020)
Sergey Egorov, Alexey Kapitanov, Vladimir Mitrofanov, Leonid Shvartsburg, Natalia Ivanova, Sergey Ryabov
Modelling of flexible manufacturing systems. Int. J. Manuf. Technol. Manag. 34 (3) (2020)
A. David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Ernest Szeto, Manoj Pillay, Jinghua Huang, Victor M. Markowitz, Torben Nielsen, Marcel Huntemann, T. B. K. Reddy, Georgios A. Pavlopoulos, Matthew B. Sullivan, Barbara J. Campbell, Feng Chen, Katherine D. McMahon, Steven J. Hallam, Vincent J. Denef, Ricardo Cavicchioli, Sean M. Caffrey, Wolfgang R. Streit, John Webster, Kim M. Handley, Ghasem H. Salekdeh, Nicolas Tsesmetzis, João C. Setubal, Phillip B. Pope, Wen-Tso Liu, Adam R. Rivers, Natalia Ivanova, Nikos Kyrpides
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. Nucleic Acids Res. 45 (Database-Issue) (2017)
Michalis Hadjithomas, I-Min A. Chen, Ken Chu, Jinghua Huang, Anna Ratner, Krishna Palaniappan, Evan Andersen, Victor M. Markowitz, Nikos Kyrpides, Natalia Ivanova
IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes. Nucleic Acids Res. 45 (Database-Issue) (2017)
I-Min A. Chen, Victor M. Markowitz, Ken Chu, Krishna Palaniappan, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Evan Andersen, Marcel Huntemann, Neha Varghese, Michalis Hadjithomas, Kristin Tennessen, Torben Nielsen, Natalia Ivanova, Nikos Kyrpides
IMG/M: integrated genome and metagenome comparative data analysis system. Nucleic Acids Res. 45 (Database-Issue) (2017)
Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Tanja Woyke, Marcel Huntemann, Iain Anderson, Konstantinos Billis, Neha Varghese, Konstantinos Mavrommatis, Amrita Pati, Natalia Ivanova, Nikos Kyrpides
IMG 4 version of the integrated microbial genomes comparative analysis system. Nucleic Acids Res. 42 (Database-Issue) (2014)
Natalia Ivanova, Ola M. Johannessen, Leif Toudal Pedersen, Rasmus T. Tonboe
Retrieval of Arctic Sea Ice Parameters by Satellite Passive Microwave Sensors: A Comparison of Eleven Sea Ice Concentration Algorithms. IEEE Trans. Geosci. Remote. Sens. 52 (11) (2014)
Georg C. Heygster, Marcus Huntemann, Natalia Ivanova, Roberto Saldo, Leif Toudal Pedersen
Response of passive microwave sea ice concentration algorithms to thin ice. IGARSS (2014)
Victor M. Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Manoj Pillay, Anna Ratner, Jinghua Huang, Ioanna Pagani, Susannah Tringe, Marcel Huntemann, Konstantinos Billis, Neha Varghese, Kristin Tennessen, Konstantinos Mavrommatis, Amrita Pati, Natalia Ivanova, Nikos Kyrpides
IMG/M 4 version of the integrated metagenome comparative analysis system. Nucleic Acids Res. 42 (Database-Issue) (2014)
Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Biju Jacob, Jinghua Huang, Peter Williams, Marcel Huntemann, Iain Anderson, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides
IMG: the integrated microbial genomes database and comparative analysis system. Nucleic Acids Res. 40 (Database-Issue) (2012)
Victor M. Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Anna Ratner, Biju Jacob, Amrita Pati, Marcel Huntemann, Konstantinos Liolios, Ioanna Pagani, Iain Anderson, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides
IMG/M: the integrated metagenome data management and comparative analysis system. Nucleic Acids Res. 40 (Database-Issue) (2012)
Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides
The integrated microbial genomes system: an expanding comparative analysis resource. Nucleic Acids Res. 38 (Database-Issue) (2010)
Sean D. Hooper, Daniel Dalevi, Amrita Pati, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides
Estimating DNA coverage and abundance in metagenomes using a gamma approximation. Bioinform. 26 (3) (2010)
Victor M. Markowitz, Konstantinos Mavrommatis, Natalia Ivanova, I-Min A. Chen, Ken Chu, Nikos Kyrpides
IMG ER: a system for microbial genome annotation expert review and curation. Bioinform. 25 (17) (2009)
Victor M. Markowitz, Natalia Ivanova, Ernest Szeto, Krishna Palaniappan, Ken Chu, Daniel Dalevi, I-Min A. Chen, Yuri Grechkin, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Philip Hugenholtz, Nikos Kyrpides
IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Res. 36 (Database-Issue) (2008)
Daniel Dalevi, Natalia Ivanova, Konstantinos Mavrommatis, Sean D. Hooper, Ernest Szeto, Philip Hugenholtz, Nikos Kyrpides, Victor M. Markowitz
Annotation of metagenome short reads using proxygenes. ECCB (2008)
Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Ken Chu, I-Min A. Chen, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides
The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. Nucleic Acids Res. 36 (Database-Issue) (2008)
Victor M. Markowitz, Natalia Ivanova, Krishna Palaniappan, Ernest Szeto, Frank Korzeniewski, Athanasios Lykidis, Iain Anderson, Konstantinos Mavrommatis, Victor Kunin, Héctor García Martín, Inna Dubchak, Philip Hugenholtz, Nikos Kyrpides
An experimental metagenome data management and analysis system. ISMB (Supplement of Bioinformatics) (2006)
Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Greg Werner, Anu Padki, Xueling Zhao, Inna Dubchak, Philip Hugenholtz, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides
The integrated microbial genomes (IMG) system. Nucleic Acids Res. 34 (Database-Issue) (2006)
Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Natalia Ivanova, Nikos Kyrpides
The Integrated Microbial Genomes (IMG) System: A Case Study in Biological Data Management. VLDB (2005)
Ross A. Overbeek, Niels Larsen, Theresa Walunas, Mark D'Souza, Gordon D. Pusch, Evgeni Selkov Jr., Konstantinos Liolios, Viktor Joukov, Denis Kaznadzey, Iain Anderson, Anamitra Bhattacharyya, Henry Burd, Warren Gardner, Paul Hanke, Vinayak Kapatral, Natalia Mikhailova, Olga Vassieva, Andrei Osterman, Veronika Vonstein, Michael Fonstein, Natalia Ivanova, Nikos Kyrpides
The ERGOTM genome analysis and discovery system. Nucleic Acids Res. 31 (1) (2003)
Evgeni Selkov, Miliusha Galimova, Igor Goryanin, Yuri Grechkin, Natalia Ivanova, Yuri Komarov, Natalia Maltsev, Natalia Mikhailova, Valeri Nenashev, Ross A. Overbeek, Elena Panyushkina, Lyudmila Pronevitch, Evgeni Selkov Jr.
The metabolic pathway collection: an update. Nucleic Acids Res. 25 (1) (1997)