Simon Roux

Publication Activity (10 Years)

Years Active: 2011-2023
Publications (10 Years): 6

Top Topics

Data Management

Top Venues

Nucleic Acids Res.

Publications

I-Min A. Chen, Ken Chu, Krishnaveni Palaniappan, Anna Ratner, Jinghua Huang, Marcel Huntemann, Patrick Hajek, Stephan Ritter, Cody Webb, Dongying Wu, Neha Varghese, T. B. K. Reddy, Supratim Mukherjee, Galina Ovchinnikova, Matt Nolan, Rekha Seshadri, Simon Roux, Axel Visel, Tanja Woyke, Emiley A. Eloe-Fadrosh, Nikos Kyrpides, Natalia Ivanova
The IMG/M data management and analysis system v.7: content updates and new features. Nucleic Acids Res. 51 (D1) (2023)
Antonio Pedro Camargo, Stephen Nayfach, I-Min A. Chen, Krishnaveni Palaniappan, Anna Ratner, Ken Chu, Stephan Ritter, T. B. K. Reddy, Supratim Mukherjee, Frederik Schulz, Lee Call, Russell Y. Neches, Tanja Woyke, Natalia N. Ivanova, Emiley A. Eloe-Fadrosh, Nikos Kyrpides, Simon Roux
IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata. Nucleic Acids Res. 51 (D1) (2023)
Simon Roux, A. David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, T. B. K. Reddy, Stephen Nayfach, Frederik Schulz, Lee Call, Russell Y. Neches, Tanja Woyke, Natalia N. Ivanova, Emiley A. Eloe-Fadrosh, Nikos Kyrpides
IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses. Nucleic Acids Res. 49 (Database-Issue) (2021)
I-Min A. Chen, Ken Chu, Krishnaveni Palaniappan, Anna Ratner, Jinghua Huang, Marcel Huntemann, Patrick Hajek, Stephan Ritter, Neha Varghese, Rekha Seshadri, Simon Roux, Tanja Woyke, Emiley A. Eloe-Fadrosh, Natalia N. Ivanova, Nikos Kyrpides
The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities. Nucleic Acids Res. 49 (Database-Issue) (2021)
Ahmed A. Zayed, Dominik Lücking, Mohamed Mohssen, Dylan Cronin, Ben Bolduc, Ann C. Gregory, Katherine R. Hargreaves, Paul D. Piehowski, Richard Allen White III, Eric L. Huang, Joshua N. Adkins, Simon Roux, Cristina Moraru, Matthew B. Sullivan
ilies. Bioinform. 37 (22) (2021)
A. David Páez-Espino, Simon Roux, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Marcel Huntemann, T. B. K. Reddy, Joan Carles Pons, Mercè Llabrés, Emiley A. Eloe-Fadrosh, Natalia N. Ivanova, Nikos Kyrpides
IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes. Nucleic Acids Res. 47 (Database-Issue) (2019)
Simon Roux, Jeremy Tournayre, Antoine Mahul, Didier Debroas, François Enault
Metavir 2: new tools for viral metagenome comparison and assembled virome analysis. BMC Bioinform. 15 (2014)
Simon Roux, Michaël Faubladier, Antoine Mahul, Nils Paulhe, Aurélien Bernard, Didier Debroas, François Enault
Metavir: a web server dedicated to virome analysis. Bioinform. 27 (21) (2011)