Victor M. Markowitz

Publication Activity (10 Years)

Years Active: 1983-2017
Publications (10 Years): 3

Top Topics

Genomic Sequences

Escherichia Coli

Comparative Analysis

Top Venues

Nucleic Acids Res.

Publications

A. David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Ernest Szeto, Manoj Pillay, Jinghua Huang, Victor M. Markowitz, Torben Nielsen, Marcel Huntemann, T. B. K. Reddy, Georgios A. Pavlopoulos, Matthew B. Sullivan, Barbara J. Campbell, Feng Chen, Katherine D. McMahon, Steven J. Hallam, Vincent J. Denef, Ricardo Cavicchioli, Sean M. Caffrey, Wolfgang R. Streit, John Webster, Kim M. Handley, Ghasem H. Salekdeh, Nicolas Tsesmetzis, João C. Setubal, Phillip B. Pope, Wen-Tso Liu, Adam R. Rivers, Natalia Ivanova, Nikos Kyrpides
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. Nucleic Acids Res. 45 (Database-Issue) (2017)
Michalis Hadjithomas, I-Min A. Chen, Ken Chu, Jinghua Huang, Anna Ratner, Krishna Palaniappan, Evan Andersen, Victor M. Markowitz, Nikos Kyrpides, Natalia Ivanova
IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes. Nucleic Acids Res. 45 (Database-Issue) (2017)
I-Min A. Chen, Victor M. Markowitz, Ken Chu, Krishna Palaniappan, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Evan Andersen, Marcel Huntemann, Neha Varghese, Michalis Hadjithomas, Kristin Tennessen, Torben Nielsen, Natalia Ivanova, Nikos Kyrpides
IMG/M: integrated genome and metagenome comparative data analysis system. Nucleic Acids Res. 45 (Database-Issue) (2017)
Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Tanja Woyke, Marcel Huntemann, Iain Anderson, Konstantinos Billis, Neha Varghese, Konstantinos Mavrommatis, Amrita Pati, Natalia Ivanova, Nikos Kyrpides
IMG 4 version of the integrated microbial genomes comparative analysis system. Nucleic Acids Res. 42 (Database-Issue) (2014)
Victor M. Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Manoj Pillay, Anna Ratner, Jinghua Huang, Ioanna Pagani, Susannah Tringe, Marcel Huntemann, Konstantinos Billis, Neha Varghese, Kristin Tennessen, Konstantinos Mavrommatis, Amrita Pati, Natalia Ivanova, Nikos Kyrpides
IMG/M 4 version of the integrated metagenome comparative analysis system. Nucleic Acids Res. 42 (Database-Issue) (2014)
I-Min A. Chen, Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Ken Chu
Maintaining a microbial genome & metagenome data analysis system in an academic setting. SSDBM (2014)
Alexandru Romosan, Arie Shoshani, Kesheng Wu, Victor M. Markowitz, Konstantinos Mavrommatis
Accelerating gene context analysis using bitmaps. SSDBM (2013)
Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Biju Jacob, Jinghua Huang, Peter Williams, Marcel Huntemann, Iain Anderson, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides
IMG: the integrated microbial genomes database and comparative analysis system. Nucleic Acids Res. 40 (Database-Issue) (2012)
Ioanna Pagani, Konstantinos Liolios, Jakob Jansson, I-Min A. Chen, Tatyana Smirnova, Bahador Nosrat, Victor M. Markowitz, Nikos Kyrpides
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res. 40 (Database-Issue) (2012)
Victor M. Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Anna Ratner, Biju Jacob, Amrita Pati, Marcel Huntemann, Konstantinos Liolios, Ioanna Pagani, Iain Anderson, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides
IMG/M: the integrated metagenome data management and comparative analysis system. Nucleic Acids Res. 40 (Database-Issue) (2012)
Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides
The integrated microbial genomes system: an expanding comparative analysis resource. Nucleic Acids Res. 38 (Database-Issue) (2010)
Konstantinos Liolios, I-Min A. Chen, Konstantinos Mavrommatis, Nektarios Tavernarakis, Philip Hugenholtz, Victor M. Markowitz, Nikos Kyrpides
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res. 38 (Database-Issue) (2010)
Itai Sharon, Amrita Pati, Victor M. Markowitz, Ron Y. Pinter
A Statistical Framework for the Functional Analysis of Metagenomes. RECOMB (2009)
Victor M. Markowitz, Konstantinos Mavrommatis, Natalia Ivanova, I-Min A. Chen, Ken Chu, Nikos Kyrpides
IMG ER: a system for microbial genome annotation expert review and curation. Bioinform. 25 (17) (2009)
Victor M. Markowitz, Natalia Ivanova, Ernest Szeto, Krishna Palaniappan, Ken Chu, Daniel Dalevi, I-Min A. Chen, Yuri Grechkin, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Philip Hugenholtz, Nikos Kyrpides
IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Res. 36 (Database-Issue) (2008)
Daniel Dalevi, Natalia Ivanova, Konstantinos Mavrommatis, Sean D. Hooper, Ernest Szeto, Philip Hugenholtz, Nikos Kyrpides, Victor M. Markowitz
Annotation of metagenome short reads using proxygenes. ECCB (2008)
Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Ken Chu, I-Min A. Chen, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides
The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. Nucleic Acids Res. 36 (Database-Issue) (2008)
Daniel Dalevi, Todd Z. DeSantis, Jakob Fredslund, Gary L. Andersen, Victor M. Markowitz, Philip Hugenholtz
Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool. BMC Bioinform. 8 (2007)
Victor M. Markowitz, Natalia Ivanova, Krishna Palaniappan, Ernest Szeto, Frank Korzeniewski, Athanasios Lykidis, Iain Anderson, Konstantinos Mavrommatis, Victor Kunin, Héctor García Martín, Inna Dubchak, Philip Hugenholtz, Nikos Kyrpides
An experimental metagenome data management and analysis system. ISMB (Supplement of Bioinformatics) (2006)
Victor M. Markowitz
An Application Driven Perspective on Biological Data Integration. DILS (2006)
Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Greg Werner, Anu Padki, Xueling Zhao, Inna Dubchak, Philip Hugenholtz, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides
The integrated microbial genomes (IMG) system. Nucleic Acids Res. 34 (Database-Issue) (2006)
Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Natalia Ivanova, Nikos Kyrpides
The Integrated Microbial Genomes (IMG) System: A Case Study in Biological Data Management. VLDB (2005)
Thodoros Topaloglou, Susan B. Davidson, H. V. Jagadish, Victor M. Markowitz, Evan W. Steeg, Mike Tyers
Biological Data Management: Research, Practice and Opportunities. VLDB (2004)
Victor M. Markowitz
Data Management Challenges for Molecular and Cell Biology: An Industry Perspective. OMICS 7 (1) (2003)
Victor M. Markowitz, I-Min A. Chen, Anthony Kosky
Gene Expression Data Management: A Case Study. EDBT (2002)
Victor M. Markowitz, Thodoros Topaloglou
Applying Data Warehousing Concepts to Gene Expression Data Management. BIBE (2001)
Thodoros Topaloglou, Anthony Kosky, Victor M. Markowitz
Seamless Integration of Biological Applications within a Database Framework. ISMB (1999)
I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto, Thodoros Topaloglou
Advanced Query Mechanisms for Biological Databases. ISMB (1998)
Anthony Kosky, I-Min A. Chen, Victor M. Markowitz, Ernest Szeto
Exploring Heterogeneous Biological Databases: Tools and Applications. EDBT (1998)
I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto
Developing and Accessing Scientific Databases with the OPM Data Management Tools. ICDE (1997)
I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto
Developing and Accessing Scientific Databases with the Object-Protocol (OPM) Data Management Tools SSDBM (1997)
I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto
Constructing and Maintaining Scientific Database Views in the Framework of the Object-Protocol Model. SSDBM (1997)
I-Min A. Chen, Victor M. Markowitz, Stanley Letovsky, Peter Li, Kenneth H. Fasman
Version Management for Scientific Databases. EDBT (1996)
I-Min A. Chen, Victor M. Markowitz
An Overview of the Object-Protocol Model (OPM) and OPM Data Management Tools. Inf. Syst. 20 (5) (1995)
I-Min A. Chen, Victor M. Markowitz
Modeling Scientific Experiments with an Object Data Model. ICDE (1995)
Victor M. Markowitz, Otto Ritter
Characterizing Heterogeneous Molecular Biology Database Systems. J. Comput. Biol. 2 (4) (1995)
Victor M. Markowitz
Heterogeneous Molecular Biology Databases. J. Comput. Biol. 2 (4) (1995)
Victor M. Markowitz, Arie Shoshani
An Overview of the Lawrence Berkeley Laboratory Extended Entity-Relationship Database Tools. ER (1994)
Victor M. Markowitz
Safe referential integrity and null constraint structures in relational databases. Inf. Syst. 19 (4) (1994)
Victor M. Markowitz, I-Min A. Chen
Data Management Tools for Genomic Applications: A Progress Report. DEXA (1993)
Victor M. Markowitz, Arie Shoshani
Object Queries over Relational Databases: Language, Implementation, and Applications. ICDE (1993)
Victor M. Markowitz, Suzanna Lewis, John L. McCarthy, Frank Olken, Manfred Zorn
Data Management for Genomic Mapping Applications: A Case Study. SSDBM (1992)
Victor M. Markowitz
A Relation Merging Technique for Relational Databases. ICDE (1992)
Victor M. Markowitz, Arie Shoshani
Representing Extended Entity-Relationship Structures in Relational Databases: A Modular Approach. ACM Trans. Database Syst. 17 (3) (1992)
Victor M. Markowitz
Problems Underlying the Use of Referential Integrity in Relational Database Management Systems. ICDE (1991)
Victor M. Markowitz
An Architecture for Identifying Objects in Multidatabases. RIDE-IMS (1991)
Victor M. Markowitz
Safe Referential Integrity Structures in Relational Databases. VLDB (1991)
Victor M. Markowitz
Referential Integrity Revisited: An Object-Oriented Perspective. VLDB (1990)
Victor M. Markowitz
Representing Processes in the Extended Entity-Relationship Model. ICDE (1990)
Victor M. Markowitz, Johann A. Makowsky
Identifying Extended Entity-Relationship Object Structures in Relational Schemas. IEEE Trans. Software Eng. 16 (8) (1990)
Victor M. Markowitz, Arie Shoshani
Abbreviated Query Interpretation in Extended Entity-Relationship Oriented Databases. ER (1989)
Victor M. Markowitz, Arie Shoshani
On the Correctness of Representing Extended Entity-Relationship Structures in the Relational Model. SIGMOD Conference (1989)
Victor M. Markowitz, Arie Shoshani
Name Assignment Techniques for Relational Schemas Representing Extended Entity-Relationship Schemas. ER (1989)
Victor M. Markowitz, Johann A. Makowsky
Incremental Restructuring of Relational Schemas. ICDE (1988)
Victor M. Markowitz, Johann A. Makowsky
Incremental Reorganization of Relational Databases. VLDB (1987)
Johann A. Makowsky, Victor M. Markowitz, Nimrod Rotics
Entity-Relationship Consistency for Relational Schemas. ICDT (1986)
Victor M. Markowitz, Yoav Raz
An entity-relationship algebra and its semantic description capabilities. J. Syst. Softw. 4 (2-3) (1984)
Victor M. Markowitz, Yoav Raz
A Modified Relational Algebra and its Use in an Entity-Relationship Environment. ER (1983)
Victor M. Markowitz, Yoav Raz
ERROL: An Entity-Relationship, Role Oriented, Query Language. ER (1983)