João C. Setubal

Publication Activity (10 Years)

Years Active: 1992-2017
Publications (10 Years): 1

Top Topics

Sequence Analysis

Redescription Mining

Ontology Merging

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

A. David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Ernest Szeto, Manoj Pillay, Jinghua Huang, Victor M. Markowitz, Torben Nielsen, Marcel Huntemann, T. B. K. Reddy, Georgios A. Pavlopoulos, Matthew B. Sullivan, Barbara J. Campbell, Feng Chen, Katherine D. McMahon, Steven J. Hallam, Vincent J. Denef, Ricardo Cavicchioli, Sean M. Caffrey, Wolfgang R. Streit, John Webster, Kim M. Handley, Ghasem H. Salekdeh, Nicolas Tsesmetzis, João C. Setubal, Phillip B. Pope, Wen-Tso Liu, Adam R. Rivers, Natalia Ivanova, Nikos Kyrpides
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. Nucleic Acids Res. 45 (Database-Issue) (2017)
João C. Setubal, Nalvo F. Almeida
TCBB Special Section on the Brazilian Symposium on Bioinformatics 2013. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (3) (2015)
Andrew S. Warren, João C. Setubal
Using Entropy Estimates for DAG-Based Ontologies. CoRR (2014)
Zanoni Dias, Ulisses Dias, João C. Setubal
SIS: a program to generate draft genome sequence scaffolds for prokaryotes. BMC Bioinform. 13 (2012)
Zanoni Dias, Ulisses Dias, Lenwood S. Heath, João C. Setubal
Sorting genomes using almost-symmetric inversions. SAC (2012)
Zanoni Dias, Ulisses Dias, João C. Setubal
Using inversion signatures to generate draft genome sequence scaffolds. BCB (2011)
Ulisses Dias, Zanoni Dias, João C. Setubal
A Simulation Tool for the Study of Symmetric Inversions in Bacterial Genomes. RECOMB-CG (2010)
Kuan Yang, João C. Setubal
Homology prediction refinement and reconstruction of gene content and order of ancestral bacterial genomes. BCB (2010)
Elijah Myers, Paul S. Fisher, Keith Irwin, Jinsuk Baek, João C. Setubal
The Complexity and Application of Syntactic Pattern Recognition Using Finite Inductive Strings. PRIB (2010)
E. E. Snyder, N. Kampanya, J. Lu, Eric K. Nordberg, H. R. Karur, Maulik Shukla, Jeetendra Soneja, Y. Tian, Tian Xue, Hyun Seung Yoo, Fengkai Zhang, C. Dharmanolla, N. V. Dongre, Joseph J. Gillespie, J. Hamelius, M. Hance, K. I. Huntington, D. Jukneliene, J. Koziski, L. Mackasmiel, S. P. Mane, V. Nguyen, A. Purkayastha, J. Shallom, G. Yu, Y. Guo, Joseph L. Gabbard, Deborah Hix, A. F. Azad, S. C. Baker, S. M. Boyle, Y. Khudyakov, X. J. Meng, C. Rupprecht, J. Vinje, Oswald Crasta, M. J. Czar, Allan Dickerman, J. Dana Eckart, Ron Kenyon, Rebecca Will, João C. Setubal, Bruno W. S. Sobral
PATRIC: The VBI PathoSystems Resource Integration Center. Nucleic Acids Res. 35 (Database-Issue) (2007)
Luciano A. Digiampietri, Claudia Bauzer Medeiros, João C. Setubal
A framewok based in Web services orchestration for bioinformatics workflow management. WOB (2004)
Nalvo F. de Almeida Jr., João C. Setubal, Marcelo de Carvalho, Carlos Juliano M. Viana
A method to determine homologous protein families based on graph cliques and profiles. WOB (2004)
Patrícia Carrião, Marcelo Perez, João C. Setubal
Parsing BLAST results to find pseudogenes in bacterial genomes. WOB (2004)
João Piazza, João C. Setubal
New ways for automatic detection of contaminats in EST projects. WOB (2003)
Marcelo Perez, Patrícia Carrião, João C. Setubal
A relational database for COG data. WOB (2003)
Luciano A. Digiampietri, Claudia Bauzer Medeiros, João C. Setubal
A data model for comparative genomics. WOB (2003)
Renato Fonseca F. Werneck, João C. Setubal
Finding Minimum Congestion Spanning Trees. ACM J. Exp. Algorithmics 5 (2000)
Renato Fonseca F. Werneck, João C. Setubal, Arlindo Flávio da Conceição
Finding Minimum Congestion Spanning Trees. WAE (1999)
Boris V. Cherkassky, Andrew V. Goldberg, Paul Martin, João C. Setubal, Jorge Stolfi
Augment or Push? A computational study of Bipartite Matching and Unit Capacity Flow Algorithms. WAE (1997)
Richard J. Anderson, João C. Setubal
A Parallel Implementation of the Push-Relabel Algorithm for the Maximum Flow Problem. J. Parallel Distributed Comput. 29 (1) (1995)
Joao Meidanis, João C. Setubal
Multiple Alignment of Biological Sequences with Gap Flexibility. LATIN (1995)
Richard J. Anderson, João C. Setubal
On the Parallel Implementation of Goldberg's Maximum Flow Algorithm. SPAA (1992)