Parsing BLAST results to find pseudogenes in bacterial genomes.
Patrícia CarriãoMarcelo PerezJoão C. SetubalPublished in: WOB (2004)
Keyphrases
- escherichia coli
- sequence alignment
- natural language
- sequence data
- natural language processing
- phylogenetic analysis
- human genome
- comparative analysis
- computational biology
- pattern matching
- natural language parsing
- context free grammars
- dependency parsing
- parse tree
- genomic sequences
- comparative genomics
- sequence analysis
- language understanding
- context free
- error recovery
- syntactic and semantic dependencies
- intermediate representation
- protein sequences
- unsupervised learning
- sequenced genomes
- graph grammars
- linguistic analysis
- phylogenetic trees
- search tools