Ulisses Dias

ORCID

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 46

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

BSB

AlCoB

J. Comput. Biol.

University of Campinas, Brazil (PHD)

Education History

University of Campinas, Brazil

PHD

Publications

Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Gabriel Siqueira, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
Maximum Alternating Balanced Cycle Decomposition and Applications in Sorting by Intergenic Operations Problems. RECOMB-CG (2024)
Andre Rodrigues Oliveira, Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Gabriel Siqueira, Ulisses Dias, Zanoni Dias
Rearrangement Distance Problems: An updated survey. ACM Comput. Surv. 56 (8) (2024)
Alexsandro Oliveira Alexandrino, Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
Reversal and Indel Distance With Intergenic Region Information. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (3) (2023)
Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
Reversal and Transposition Distance on Unbalanced Genomes Using Intergenic Information. J. Comput. Biol. 30 (8) (2023)
Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
Genome Rearrangement Distance With a Flexible Intergenic Regions Aspect. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (3) (2023)
Klairton Lima Brito, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Ulisses Dias, Zanoni Dias
Rearrangement distance with reversals, indels, and moves in intergenic regions on signed and unsigned permutations. J. Bioinform. Comput. Biol. 21 (2) (2023)
Alexsandro Oliveira Alexandrino, Gabriel Siqueira, Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
Block Interchange and Reversal Distance on Unbalanced Genomes. BSB (2023)
Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
Approximation algorithms for sorting by k-cuts on signed permutations. J. Comb. Optim. 45 (1) (2023)
Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
Labeled Cycle Graph for Transposition and Indel Distance. J. Comput. Biol. 29 (3) (2022)
Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
Sorting by k-Cuts on Signed Permutations. RECOMB-CG (2022)
Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
Transposition Distance Considering Intergenic Regions for Unbalanced Genomes. ISBRA (2022)
Alexsandro Oliveira Alexandrino, Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
A 1.375-Approximation Algorithm for Sorting by Transpositions with Faster Running Time. BSB (2022)
Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
On the Complexity of Some Variations of Sorting by Transpositions. CoRR (2022)
Klairton Lima Brito, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Ulisses Dias, Zanoni Dias
A New Approach for the Reversal Distance with Indels and Moves in Intergenic Regions. RECOMB-CG (2022)
Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
Reversals and transpositions distance with proportion restriction. J. Bioinform. Comput. Biol. 19 (4) (2021)
Klairton Lima Brito, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Ulisses Dias, Zanoni Dias
Reversal and Transposition Distance of Genomes Considering Flexible Intergenic Regions. LAGOS (2021)
Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
Incorporating intergenic regions into reversal and transposition distances with indels. J. Bioinform. Comput. Biol. 19 (6) (2021)
Klairton Lima Brito, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Ulisses Dias, Zanoni Dias
An improved approximation algorithm for the reversal and transposition distance considering gene order and intergenic sizes. Algorithms Mol. Biol. 16 (1) (2021)
Alexsandro Oliveira Alexandrino, Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
Reversal Distance on Genomes with Different Gene Content and Intergenic Regions Information. AlCoB (2021)
Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
Reversals Distance Considering Flexible Intergenic Regions Sizes. AlCoB (2021)
Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
Genome Rearrangement Distance with Reversals, Transpositions, and Indels. J. Comput. Biol. 28 (3) (2021)
Gabriel Siqueira, Klairton Lima Brito, Ulisses Dias, Zanoni Dias
Heuristics for Genome Rearrangement Distance With Replicated Genes. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (6) (2021)
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Ulisses Dias, Zanoni Dias
Sorting Permutations by Intergenic Operations. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (6) (2021)
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Laurent Bulteau, Ulisses Dias, Zanoni Dias
Sorting Signed Permutations by Intergenic Reversals. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (6) (2021)
Klairton Lima Brito, Géraldine Jean, Guillaume Fertin, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
Sorting by Genome Rearrangements on Both Gene Order and Intergenic Sizes. J. Comput. Biol. 27 (2) (2020)
Gabriel Siqueira, Klairton Lima Brito, Ulisses Dias, Zanoni Dias
Heuristics for Reversal Distance Between Genomes with Duplicated Genes. AlCoB (2020)
Danielle Dias, Ulisses Dias, Nathalia Menini, Rubens A. C. Lamparelli, Guerric le Maire, Ricardo da Silva Torres
Image-Based Time Series Representations for Pixelwise Eucalyptus Region Classification: A Comparative Study. IEEE Geosci. Remote. Sens. Lett. 17 (8) (2020)
Danielle Dias, Allan da Silva Pinto, Ulisses Dias, Rubens A. C. Lamparelli, Guerric le Maire, Ricardo da Silva Torres
A Multirepresentational Fusion of Time Series for Pixelwise Classification. IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens. 13 (2020)
Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
Sorting by Reversals and Transpositions with Proportion Restriction. BSB (2020)
Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
Heuristics for the Reversal and Transposition Distance Problem. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (1) (2020)
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Ulisses Dias, Zanoni Dias
A 3.5-Approximation Algorithm for Sorting by Intergenic Transpositions. AlCoB (2020)
Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
On the Complexity of Some Variations of Sorting by Transpositions. J. Univers. Comput. Sci. 26 (9) (2020)
Andre Rodrigues Oliveira, Klairton Lima Brito, Ulisses Dias, Zanoni Dias
On the Complexity of Sorting by Reversals and Transpositions Problems. J. Comput. Biol. 26 (11) (2019)
Klairton Lima Brito, Géraldine Jean, Guillaume Fertin, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
Sorting by Reversals, Transpositions, and Indels on Both Gene Order and Intergenic Sizes. ISBRA (2019)
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
Super short operations on both gene order and intergenic sizes. Algorithms Mol. Biol. 14 (1) (2019)
Andre Rodrigues Oliveira, Klairton Lima Brito, Zanoni Dias, Ulisses Dias
Sorting by Weighted Reversals and Transpositions. J. Comput. Biol. 26 (5) (2019)
Danielle Dias, Ulisses Dias, Nathalia Menini, Rubens A. C. Lamparelli, Guerric le Maire, Ricardo da Silva Torres
Pixelwise Remote Sensing Image Classification Based on Recurrence Plot Deep Features. IGARSS (2019)
Ulisses Dias, Andre Rodrigues Oliveira, Klairton Lima Brito, Zanoni Dias
Block-Interchange Distance Considering Intergenic Regions. BSB (2019)
Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
Heuristics for the Sorting Signed Permutations by Reversals and Transpositions Problem. AlCoB (2018)
Andre Rodrigues Oliveira, Klairton Lima Brito, Zanoni Dias, Ulisses Dias
Sorting by Weighted Reversals and Transpositions. BSB (2018)
Danielle Dias, Ulisses Dias
Transfer Learning with CNN Architectures for Classifying Gastrointestinal Diseases and Anatomical Landmarks. MediaEval (2018)
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
Super Short Reversals on Both Gene Order and Intergenic Sizes. BSB (2018)
Danielle Dias, Ulisses Dias
Flood Detection from Social Multimedia and Satellite Images Using Ensemble and Transfer Learning with CNN Architectures. MediaEval (2018)
Andre Rodrigues Oliveira, Guillaume Fertin, Ulisses Dias, Zanoni Dias
Sorting signed circular permutations by super short operations. Algorithms Mol. Biol. 13 (1) (2018)
Thiago da Silva Arruda, Ulisses Dias, Zanoni Dias
A GRASP-Based Heuristic for the Sorting by Length-Weighted Inversions Problem. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (2) (2018)
Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
On the Sorting by Reversals and Transpositions Problem. J. Univers. Comput. Sci. 23 (9) (2017)
Christian Baudet, Ulisses Dias, Zanoni Dias
Sorting by weighted inversions considering length and symmetry. BMC Bioinform. 16 (S19) (2015)
Zanoni Dias, Ulisses Dias
Sorting by Prefix Reversals and Prefix Transpositions. Discret. Appl. Math. 181 (2015)
Thiago da Silva Arruda, Ulisses Dias, Zanoni Dias
Heuristics for the Sorting by Length-Weighted Inversions Problem on Signed Permutations. AlCoB (2014)
Christian Baudet, Ulisses Dias, Zanoni Dias
Length and Symmetry on the Sorting by Weighted Inversions Problem. BSB (2014)
Ulisses Dias, Andre Rodrigues Oliveira, Zanoni Dias
An improved algorithm for the sorting by reversals and transpositions problem. BCB (2014)
Ulisses Dias, Gustavo Rodrigues Galvão, Carla Negri Lintzmayer, Zanoni Dias
A general heuristic for genome rearrangement problems. J. Bioinform. Comput. Biol. 12 (3) (2014)
Ulisses Dias, Christian Baudet, Zanoni Dias
Greedy Randomized Search Procedure to Sort Genomes using Symmetric, Almost-Symmetric and Unitary Inversions. BCB (2013)
Thiago da Silva Arruda, Ulisses Dias, Zanoni Dias
Heuristics for the Sorting by Length-Weighted Inversion Problem. BCB (2013)
Ulisses Dias, Zanoni Dias
Heuristics for the Transposition Distance Problem. J. Bioinform. Comput. Biol. 11 (5) (2013)
Zanoni Dias, Ulisses Dias, João C. Setubal
SIS: a program to generate draft genome sequence scaffolds for prokaryotes. BMC Bioinform. 13 (2012)
Zanoni Dias, Ulisses Dias, Lenwood S. Heath, João C. Setubal
Sorting genomes using almost-symmetric inversions. SAC (2012)
Zanoni Dias, Ulisses Dias, João C. Setubal
Using inversion signatures to generate draft genome sequence scaffolds. BCB (2011)
Ulisses Dias, Zanoni Dias, João C. Setubal
A Simulation Tool for the Study of Symmetric Inversions in Bacterial Genomes. RECOMB-CG (2010)
Ulisses Dias, Zanoni Dias
An improved 1.375-approximation algorithm for the transposition distance problem. BCB (2010)
Ulisses Dias, Zanoni Dias
Constraint Programming Models for Transposition Distance Problem. BSB (2009)

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Publication Activity (10 Years)

Top Topics

Top Venues

Ulisses Dias