Géraldine Jean

ORCID

Publication Activity (10 Years)

Years Active: 2007-2023
Publications (10 Years): 25

Top Venues

BMC Bioinform.

ISBRA

IEEE ACM Trans. Comput. Biol. Bioinform.

J. Comput. Biol.

University of Bordeaux, France (PHD)

Education History

University of Bordeaux, France

PHD

Publications

Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
Reversal and Transposition Distance on Unbalanced Genomes Using Intergenic Information. J. Comput. Biol. 30 (8) (2023)
Gabriel Siqueira, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Zanoni Dias
Approximating Rearrangement Distances with Replicas and Flexible Intergenic Regions. ISBRA (2023)
Grégoire Prunier, Mehdi Cherkaoui, Albane Lysiak, Olivier Langella, Mélisande Blein-Nicolas, Virginie Lollier, Emile Benoist, Géraldine Jean, Guillaume Fertin, Hélène Rogniaux, Dominique Tessier
Fast alignment of mass spectra in large proteomics datasets, capturing dissimilarities arising from multiple complex modifications of peptides. BMC Bioinform. 24 (1) (2023)
Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
Approximation algorithms for sorting by k-cuts on signed permutations. J. Comb. Optim. 45 (1) (2023)
Guillaume Fertin, Oscar Fontaine, Géraldine Jean, Stéphane Vialette
The Maximum Zero-Sum Partition Problem. ICS (2022)
Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
Sorting by k-Cuts on Signed Permutations. RECOMB-CG (2022)
Guillaume Fertin, Géraldine Jean, Anthony Labarre
Sorting Genomes by Prefix Double-Cut-and-Joins. SPIRE (2022)
Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
Transposition Distance Considering Intergenic Regions for Unbalanced Genomes. ISBRA (2022)
Guillaume Fertin, Géraldine Jean, Anthony Labarre
Sorting Genomes by Prefix Double-Cut-and-Joins. CoRR (2022)
Emile Benoist, Guillaume Fertin, Géraldine Jean
The Exact Subset MultiCover Problem. TAMC (2022)
Laurent Bulteau, Guillaume Fertin, Géraldine Jean, Christian Komusiewicz
Sorting by Multi-Cut Rearrangements. Algorithms 14 (6) (2021)
Laurent Bulteau, Guillaume Fertin, Géraldine Jean, Christian Komusiewicz
Sorting by Multi-cut Rearrangements. SOFSEM (2021)
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Ulisses Dias, Zanoni Dias
Sorting Permutations by Intergenic Operations. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (6) (2021)
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Laurent Bulteau, Ulisses Dias, Zanoni Dias
Sorting Signed Permutations by Intergenic Reversals. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (6) (2021)
Albane Lysiak, Guillaume Fertin, Géraldine Jean, Dominique Tessier
Evaluation of open search methods based on theoretical mass spectra comparison. BMC Bioinform. (2) (2021)
Guillaume Fertin, Julien Fradin, Géraldine Jean
The Maximum Colorful Arborescence problem: How (computationally) hard can it be? Theor. Comput. Sci. 852 (2021)
Klairton Lima Brito, Géraldine Jean, Guillaume Fertin, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
Sorting by Genome Rearrangements on Both Gene Order and Intergenic Sizes. J. Comput. Biol. 27 (2) (2020)
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Ulisses Dias, Zanoni Dias
A 3.5-Approximation Algorithm for Sorting by Intergenic Transpositions. AlCoB (2020)
Klairton Lima Brito, Géraldine Jean, Guillaume Fertin, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
Sorting by Reversals, Transpositions, and Indels on Both Gene Order and Intergenic Sizes. ISBRA (2019)
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
Super short operations on both gene order and intergenic sizes. Algorithms Mol. Biol. 14 (1) (2019)
Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias
Super Short Reversals on Both Gene Order and Intergenic Sizes. BSB (2018)
Guillaume Fertin, Loïc Jankowiak, Géraldine Jean
Prefix and suffix reversals on strings. Discret. Appl. Math. 246 (2018)
Guillaume Fertin, Géraldine Jean, Eric Tannier
Algorithms for computing the double cut and join distance on both gene order and intergenic sizes. Algorithms Mol. Biol. 12 (1) (2017)
Guillaume Fertin, Julien Fradin, Géraldine Jean
Algorithmic Aspects of the Maximum Colorful Arborescence Problem. TAMC (2017)
Guillaume Fertin, Géraldine Jean, Eric Tannier
Genome Rearrangements on Both Gene Order and Intergenic Regions. WABI (2016)
Guillaume Fertin, Loïc Jankowiak, Géraldine Jean
Prefix and Suffix Reversals on Strings. SPIRE (2015)
Vipin T. Sreedharan, Sebastian J. Schultheiß, Géraldine Jean, André Kahles, Regina Bohnert, Philipp Drewe, Pramod Mudrakarta, Nico Görnitz, Georg Zeller, Gunnar Rätsch
Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis. Bioinform. 30 (9) (2014)
Guillaume Fertin, Géraldine Jean, Andreea Radulescu, Irena Rusu
DExTaR: Detection of exact tandem repeats based on the de Bruijn graph. BIBM (2014)
Vipin T. Sreedharan, Sebastian J. Schultheiß, Géraldine Jean, André Kahles, Regina Bohnert, Philipp Drewe, Pramod Mudrakarta, Nico Görnitz, Georg Zeller, Gunnar Rätsch
Oqtans: a multifunctional workbench for RNA-seq data analysis. BMC Bioinform. 15 (S-3) (2014)
Géraldine Jean, Macha Nikolski
SyDiG: uncovering Synteny in Distant Genomes. Int. J. Bioinform. Res. Appl. 7 (1) (2011)
Sebastian J. Schultheiß, Géraldine Jean, Jonas Behr, Regina Bohnert, Philipp Drewe, Nico Görnitz, André Kahles, Pramod Mudrakarta, Vipin T. Sreedharan, Georg Zeller, Gunnar Rätsch
Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data. BMC Bioinform. 12 (S-11) (2011)
Géraldine Jean, David James Sherman, Macha Nikolski
Mining the Semantics of Genome Super-Blocks to Infer Ancestral Architectures. J. Comput. Biol. 16 (9) (2009)
Géraldine Jean, Macha Nikolski
Genome rearrangements: a correct algorithm for optimal capping. Inf. Process. Lett. 104 (1) (2007)

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Publication Activity (10 Years)

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Géraldine Jean