An improved approximation algorithm for the reversal and transposition distance considering gene order and intergenic sizes.
Klairton Lima BritoAndre Rodrigues OliveiraAlexsandro Oliveira AlexandrinoUlisses DiasZanoni DiasPublished in: Algorithms Mol. Biol. (2021)
Keyphrases
- cost function
- learning algorithm
- k means
- genetic algorithm
- detection algorithm
- optimization algorithm
- theoretical analysis
- randomized algorithm
- times faster
- closed form
- simulated annealing
- worst case
- experimental evaluation
- dynamic programming
- np hard
- evolutionary algorithm
- optimal solution
- high accuracy
- approximation ratio
- error bounds
- computational complexity
- matching algorithm
- microarray
- distance function
- convex hull
- preprocessing
- approximation algorithms
- distance transform
- particle swarm optimization
- objective function