Alexandre G. de Brevern

Publication Activity (10 Years)

Years Active: 2000-2022
Publications (10 Years): 7

Top Topics

Protein Structure

Molecular Biology

Top Venues

Database J. Biol. Databases Curation

Nucleic Acids Res.

Publications

Pierrick Craveur, Tarun J. Narwani, Narayanaswamy Srinivasan, Jean-Christophe Gelly, Joseph Rebehmed, Alexandre G. de Brevern
Shaking the β-Bulges. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (1) (2022)
Gabriel Cretin, Tatiana Galochkina, Yann Vander Meersche, Alexandre G. de Brevern, Guillaume Postic, Jean-Christophe Gelly
SWORD2: hierarchical analysis of protein 3D structures. Nucleic Acids Res. 50 (W1) (2022)
Guilhem Faure, Agnel Praveen Joseph, Pierrick Craveur, Tarun J. Narwani, Narayanaswamy Srinivasan, Jean-Christophe Gelly, Joseph Rebehmed, Alexandre G. de Brevern
iPBAvizu: a PyMOL plugin for an efficient 3D protein structure superimposition approach. Source Code Biol. Medicine 14 (1) (2019)
Vincent Demolombe, Alexandre G. de Brevern, Liza F. Felicori, Christophe Nguyen, Ricardo Andrez Machado de Avila, Lionel Valera, Bénédicte Jardin-Watelet, Géraldine Lavigne, Aurélien Lebreton, Franck Molina, Violaine Moreau
PEPOP 2.0: new approaches to mimic non-continuous epitopes. BMC Bioinform. 20 (1) (2019)
Vincent Demolombe, Alexandre G. de Brevern, Franck Molina, Géraldine Lavigne, Claude Granier, Violaine Moreau
Benchmarking the PEPOP methods for mimicking discontinuous epitopes. BMC Bioinform. 20 (1) (2019)
Sneha Vishwanath, Alexandre G. de Brevern, Narayanaswamy Srinivasan
Same but not alike: Structure, flexibility and energetics of domains in multi-domain proteins are influenced by the presence of other domains. PLoS Comput. Biol. 14 (2) (2018)
Yassine Ghouzam, Guillaume Postic, Alexandre G. de Brevern, Jean-Christophe Gelly
Improving protein fold recognition with hybrid profiles combining sequence and structure evolution. Bioinform. 31 (23) (2015)
Pierrick Craveur, Joseph Rebehmed, Alexandre G. de Brevern
PTM-SD: a database of structurally resolved and annotated posttranslational modifications in proteins. Database J. Biol. Databases Curation 2014 (2014)
Romain Chebrek, Sylvain Léonard, Alexandre G. de Brevern, Jean-Christophe Gelly
PolyprOnline: polyproline helix II and secondary structure assignment database. Database J. Biol. Databases Curation 2014 (2014)
Jeremy Esque, Sylvain Léonard, Alexandre G. de Brevern, Christophe Oguey
VLDP web server: a powerful geometric tool for analysing protein structures in their environment. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Swapnil Mahajan, Garima Agarwal, Mohammed Iftekhar, Bernard O. Offmann, Alexandre G. de Brevern, Narayanaswamy Srinivasan
DoSA: Database of Structural Alignments. Database J. Biol. Databases Curation 2013 (2013)
Alexandre G. de Brevern, Aurélie Bornot, Pierrick Craveur, Catherine Etchebest, Jean-Christophe Gelly
PredyFlexy: flexibility and local structure prediction from sequence. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Jeremy Esque, Christophe Oguey, Alexandre G. de Brevern
Comparative Analysis of Threshold and Tessellation Methods for Determining Protein Contacts. J. Chem. Inf. Model. 51 (2) (2011)
Jean-Christophe Gelly, Agnel Praveen Joseph, Narayanaswamy Srinivasan, Alexandre G. de Brevern
iPBA: a tool for protein structure comparison using sequence alignment strategies. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Jean-Christophe Gelly, Alexandre G. de Brevern
Protein Peeling 3D: new tools for analyzing protein structures. Bioinform. 27 (1) (2011)
Ksenia Oguievetskaia, Laetitia Martin-Chanas, Artem Vorotyntsev, Olivia Doppelt-Azeroual, Xavier Brotel, Stewart A. Adcock, Alexandre G. de Brevern, François Delfaud, Fabrice Moriaud
Computational fragment-based drug design to explore the hydrophobic subpocket of the mitotic kinesin Eg5 allosteric binding site. J. Cheminformatics 2 (S-1) (2010)
Jeremy Esque, Christophe Oguey, Alexandre G. de Brevern
A Novel Evaluation of Residue and Protein Volumes by Means of Laguerre Tessellation. J. Chem. Inf. Model. 50 (5) (2010)
Manoj Tyagi, Aurélie Bornot, Bernard O. Offmann, Alexandre G. de Brevern
Protein short loop prediction in terms of a structural alphabet. Comput. Biol. Chem. 33 (4) (2009)
Ksenia Oguievetskaia, Laetitia Martin-Chanas, Artem Vorotyntsev, Olivia Doppelt-Azeroual, Xavier Brotel, Stewart A. Adcock, Alexandre G. de Brevern, François Delfaud, Fabrice Moriaud
Computational fragment-based drug design to explore the hydrophobic sub-pocket of the mitotic kinesin Eg5 allosteric binding site. J. Comput. Aided Mol. Des. 23 (8) (2009)
Manoj Tyagi, P. Sharma, C. S. Swamy, F. Cadet, Narayanaswamy Srinivasan, Alexandre G. de Brevern, Bernard O. Offmann
Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Jean-Christophe Gelly, Alexandre G. de Brevern, Serge A. Hazout
'Protein Peeling': an approach for splitting a 3D protein structure into compact fragments. Bioinform. 22 (2) (2006)
Jean-Christophe Gelly, Catherine Etchebest, Serge A. Hazout, Alexandre G. de Brevern
Protein Peeling 2: a web server to convert protein structures into series of protein units. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Alexandre G. de Brevern
New assessment of a structural alphabet. Silico Biol. 5 (3) (2005)
Alexandre G. de Brevern, Cristina Benros, Romain Gautier, Hélène Valadié, Serge A. Hazout, Catherine Etchebest
Local backbone structure prediction of proteins. Silico Biol. 4 (3) (2004)
Alexandre G. de Brevern, Serge A. Hazout, Alain Malpertuy
Influence of microarrays experiments missing values on the stability of gene groups by hierarchical clustering. BMC Bioinform. 5 (2004)
Laurent Fourrier, Cristina Benros, Alexandre G. de Brevern
Use of a structural alphabet for analysis of short loops connecting repetitive structures. BMC Bioinform. 5 (2004)
Alexandre G. de Brevern, Serge A. Hazout
'Hybrid Protein Model' for optimally defining 3D protein structure fragments. Bioinform. 19 (3) (2003)
Cristina Benros, Alexandre G. de Brevern, Serge A. Hazout
Hybrid protein model (HPM): a method for building a library of overlapping local structural prototypes. Sensitivity study and improvements of the training. NNSP (2003)
Alexandre G. de Brevern, France Loirat, Anne Badel-Chagnon, Cécile André, Pierre Vincens, Serge A. Hazout
Genome Compartimentation by a Hybrid Chromosome Model (HM). Application to Saccharomyces Cerevisae Subtelomeres. Comput. Chem. 26 (5) (2002)
Alexandre G. de Brevern, Serge A. Hazout
Hybrid Protein Model (HPM): A Method to Compact Protein 3D-Structure Information and Physicochemical Properties. SPIRE (2000)