Yudi Pawitan

Publication Activity (10 Years)

Years Active: 1993-2022
Publications (10 Years): 7

Top Topics

Joint Estimation

Mixture Components

Top Venues

Comput. Stat. Data Anal.

Briefings Bioinform.

Publications

Lu Pan, Huy Q. Dinh, Yudi Pawitan, Trung-Nghia Vu
Isoform-level quantification for single-cell RNA sequencing. Bioinform. 38 (5) (2022)
Dat Thanh Nguyen, Quang Thinh Trac, Thi-Hau Nguyen, Ha-Nam Nguyen, Nir Ohad, Yudi Pawitan, Trung-Nghia Vu
Circall: fast and accurate methodology for discovery of circular RNAs from paired-end RNA-sequencing data. BMC Bioinform. 22 (1) (2021)
Wenjiang Deng, Tian Mou, Krishna R. Kalari, Nifang Niu, Liewei Wang, Yudi Pawitan, Trung-Nghia Vu
Alternating EM algorithm for a bilinear model in isoform quantification from RNA-seq data. Bioinform. 36 (3) (2020)
Trung-Nghia Vu, Ha-Nam Nguyen, Stefano Calza, Krishna R. Kalari, Liewei Wang, Yudi Pawitan
Cell-level somatic mutation detection from single-cell RNA sequencing. Bioinform. 35 (22) (2019)
Sangin Lee, Youngjo Lee, Yudi Pawitan
Sparse pathway-based prediction models for high-throughput molecular data. Comput. Stat. Data Anal. 126 (2018)
Trung-Nghia Vu, Quin F. Wills, Krishna R. Kalari, Nifang Niu, Liewei Wang, Yudi Pawitan, Mattias Rantalainen
Isoform-level gene expression patterns in single-cell RNA-sequencing data. Bioinform. 34 (14) (2018)
Trung-Nghia Vu, Quin F. Wills, Krishna R. Kalari, Nifang Niu, Liewei Wang, Mattias Rantalainen, Yudi Pawitan
Beta-Poisson model for single-cell RNA-seq data analyses. Bioinform. 32 (14) (2016)
Chen Suo, Olga Hrydziuszko, Donghwan Lee, Setia Pramana, Dhany Saputra, Himanshu Joshi, Stefano Calza, Yudi Pawitan
Integration of somatic mutation, expression and functional data reveals potential driver genes predictive of breast cancer survival. Bioinform. 31 (16) (2015)
Sangin Lee, Yudi Pawitan, Youngjo Lee
A random-effect model approach for group variable selection. Comput. Stat. Data Anal. 89 (2015)
Andrea Ganna, Donghwan Lee, Erik Ingelsson, Yudi Pawitan
Rediscovery rate estimation for assessing the validation of significant findings in high-throughput studies. Briefings Bioinform. 16 (4) (2015)
Chen Suo, Stefano Calza, Agus Salim, Yudi Pawitan
Joint estimation of isoform expression and isoform-specific read distribution using multisample RNA-Seq data. Bioinform. 30 (4) (2014)
Arief Gusnanto, Alexander Ploner, Farag Shuweihdi, Yudi Pawitan
Partial least squares and logistic regression random-effects estimates for gene selection in supervised classification of gene expression data. J. Biomed. Informatics 46 (4) (2013)
Teo Shu Mei, Yudi Pawitan, Ku Chee Seng, Kee Seng Chia, Agus Salim
Statistical challenges associated with detecting copy number variations with next-generation sequencing. Bioinform. 28 (21) (2012)
Andrey Alexeyenko, Woojoo Lee, Maria Pernemalm, Justin Guegan, Philippe Dessen, Vladimir Lazar, Janne Lehtiö, Yudi Pawitan
Network enrichment analysis: extension of gene-set enrichment analysis to gene networks. BMC Bioinform. 13 (2012)
Arief Gusnanto, Henry M. Wood, Yudi Pawitan, Pamela Rabbitts, Stefano Berri
Correcting for cancer genome size and tumour cell content enables better estimation of copy number alterations from next-generation sequence data. Bioinform. 28 (1) (2012)
Teo Shu Mei, Yudi Pawitan, Vikrant Kumar, Anbupalam Thalamuthu, Mark Seielstad, Kee Seng Chia, Agus Salim
Multi-platform segmentation for joint detection of copy number variants. Bioinform. 27 (11) (2011)
Donghwan Lee, Woojoo Lee, Youngjo Lee, Yudi Pawitan
Super-sparse principal component analyses for high-throughput genomic data. BMC Bioinform. 11 (2010)
Teo Shu Mei, Agus Salim, Stefano Calza, Ku Chee Seng, Kee Seng Chia, Yudi Pawitan
Identification of recurrent regions of copy-number variants across multiple individuals. BMC Bioinform. 11 (2010)
Chuen Seng Tan, Agus Salim, Alexander Ploner, Janne Lehtiö, Kee Seng Chia, Yudi Pawitan
Correlating gene and protein expression data using Correlated Factor Analysis. BMC Bioinform. 10 (2009)
Meaza Demissie, Barbara Mascialino, Stefano Calza, Yudi Pawitan
Unequal group variances in microarray data analyses. Bioinform. 24 (9) (2008)
Stefano Calza, Davide Valentini, Yudi Pawitan
Normalization of oligonucleotide arrays based on the least-variant set of genes. BMC Bioinform. 9 (2008)
Jian Huang, Arief Gusnanto, Kathleen O'Sullivan, Johan Staaf, Åke Borg, Yudi Pawitan
Robust smooth segmentation approach for array CGH data analysis. Bioinform. 23 (18) (2007)
Elena Perelman, Alexander Ploner, Stefano Calza, Yudi Pawitan
Detecting differential expression in microarray data: comparison of optimal procedures. BMC Bioinform. 8 (2007)
Alexander Ploner, Stefano Calza, Arief Gusnanto, Yudi Pawitan
Multidimensional local false discovery rate for microarray studies. Bioinform. 22 (5) (2006)
Yudi Pawitan, Stefano Calza, Alexander Ploner
Estimation of false discovery proportion under general dependence. Bioinform. 22 (24) (2006)
Chuen Seng Tan, Alexander Ploner, Andreas Quandt, Janne Lehtiö, Yudi Pawitan
Finding regions of significance in SELDI measurements for identifying protein biomarkers. Bioinform. 22 (12) (2006)
Yudi Pawitan, Valentino Bettinardi, M. Teras
Non-Gaussian smoothing of low-count transmission scans for PET whole-body studies. IEEE Trans. Medical Imaging 24 (1) (2005)
Yudi Pawitan, Stefan Michiels, Serge Koscielny, Arief Gusnanto, Alexander Ploner
False discovery rate, sensitivity and sample size for microarray studies. Bioinform. 21 (13) (2005)
Andreas Quandt, Alexander Ploner, Chuen Seng Tan, Janne Lehtiö, Yudi Pawitan
ProSpect: An R Package for Analyzing SELDI Measurements Identifying Protein Biomarkers. CompLife (2005)
Alexander Ploner, Lance D. Miller, Per Hall, Jonas Bergh, Yudi Pawitan
Correlation test to assess low-level processing of high-density oligonucleotide microarray data. BMC Bioinform. 6 (2005)
Yudi Pawitan, Karuturi R. Krishna Murthy, Stefan Michiels, Alexander Ploner
Bias in the estimation of false discovery rate in microarray studies. Bioinform. 21 (20) (2005)
Yudi Pawitan, Finbarr O'Sullivan
Data-dependent bandwidth selection for emission computed tomography reconstruction. IEEE Trans. Medical Imaging 12 (2) (1993)