Thomas L. Casavant

Publication Activity (10 Years)

Years Active: 1986-2022
Publications (10 Years): 3

Top Topics

Redundant Features

Random Sampling

Top Venues

Comput. Biol. Medicine

Publications

Michael C. Rendleman, Brian J. Smith, Guadalupe Canahuate, Terry A. Braun, John M. Buatti, Thomas L. Casavant
Representative random sampling: an empirical evaluation of a novel bin stratification method for model performance estimation. Stat. Comput. 32 (6) (2022)
Michael C. Rendleman, John M. Buatti, Terry A. Braun, Brian J. Smith, Chibuzo Nwakama, Reinhard R. Beichel, Bartley Brown, Thomas L. Casavant
Machine learning with the TCGA-HNSC dataset: improving usability by addressing inconsistency, sparsity, and high-dimensionality. BMC Bioinform. 20 (1) (2019)
Yusung Kim, Kaustubh Anil Patwardhan, Reinhard R. Beichel, Brian J. Smith, Christopher Mart, Kristin A. Plichta, Tangel Chang, Milan Sonka, Michael M. Graham, Vince Magnotta, Thomas L. Casavant, Junyi Xia, John M. Buatti
Development of a radiobiological evaluation tool to assess the expected clinical impacts of contouring accuracy between manual and semi-automated segmentation algorithms. EMBC (2017)
Corey W. Goodman, Heather J. Major, William D. Walls, Val C. Sheffield, Thomas L. Casavant, Benjamin W. Darbro
CNV-ROC: A cost effective, computer-aided analytical performance evaluator of chromosomal microarrays. J. Biomed. Informatics 54 (2015)
Sean S. Ephraim, Nikhil Anand, Adam P. DeLuca, Kyle R. Taylor, Diana L. Kolbe, Allen C. Simpson, Hela Azaiez, Christina M. Sloan, A. Eliot Shearer, Andrea R. Hallier, Thomas L. Casavant, Todd E. Scheetz, Richard J. H. Smith, Terry A. Braun
Cordova: Web-based management of genetic variation data. Bioinform. 30 (23) (2014)
Kishore Nannapaneni, Yehuda Ben-Shahar, Henry L. Keen, Michael J. Welsh, Thomas L. Casavant, Todd E. Scheetz
Computational identification of operon-like transcriptional loci in eukaryotes. Comput. Biol. Medicine 43 (6) (2013)
Jinlu Cai, Henry L. Keen, Curt D. Sigmund, Thomas L. Casavant
Coex-Rank: An approach incorporating co-expression information for combined analysis of microarray data. J. Integr. Bioinform. 9 (1) (2012)
Kyle R. Taylor, Adam P. DeLuca, Corey W. Goodman, Bruce W. Tompkins, Todd E. Scheetz, Michael S. Hildebrand, Patrick L. M. Huygen, Richard J. H. Smith, Terry A. Braun, Thomas L. Casavant
AudioGene: Computer-based prediction of genetic factors involved in non-syndromic hearing impairment. AICCSA (2011)
Adam P. DeLuca, Alex H. Wagner, Kyle R. Taylor, Ben Faga, David Thole, Val C. Sheffield, Edwin M. Stone, Thomas L. Casavant, Todd E. Scheetz, Terry A. Braun
Sequencing and disease variation detection tools and techniques. AICCSA (2011)
Jesse D. Walters, Thomas B. Bair, Terry A. Braun, Todd E. Scheetz, John P. Robinson, Thomas L. Casavant
Validation of computational prediction of horizontal gene transfer events - XenoCluster. J. Supercomput. 57 (2) (2011)
Jesse D. Walters, Thomas B. Bair, Terry A. Braun, Todd E. Scheetz, John P. Robinson, Thomas L. Casavant
Multi-granularity Parallel Computing in a Genome-Scale Molecular Evolution Application. PaCT (2009)
Krishna R. Kalari, Thomas L. Casavant, Todd E. Scheetz
A knowledge-based approach to predict intragenic deletions or duplications. Bioinform. 24 (18) (2008)
Brian O'Leary, Steven G. Davis, Michael F. Smith, Bartley Brown, Mathew B. Kemp, Hakeem G. Almabrazi, Jason A. Grundstad, Thomas Burns, Vladimir Leontiev, Jeaneen Andorf, Abbot F. Clark, Val C. Sheffield, Thomas L. Casavant, Todd E. Scheetz, Edwin M. Stone, Terry A. Braun
Transcript Annotation Prioritization and Screening System (TRApss) for Mutation Screening. J. Bioinform. Comput. Biol. 5 (6) (2007)
Krishna R. Kalari, Melanie Casavant, Thomas B. Bair, Henry L. Keen, Josep M. Comeron, Thomas L. Casavant, Todd E. Scheetz
First Exons and Introns - A Survey of GC Content and Gene Structure in the Human Genome. Silico Biol. 6 (3) (2006)
Todd E. Scheetz, Nishank Trivedi, Kevin T. Pedretti, Terry A. Braun, Thomas L. Casavant
Gene transcript clustering: a comparison of parallel approaches. Future Gener. Comput. Syst. 21 (4) (2005)
Jesse D. Walters, Thomas L. Casavant, John P. Robinson, Thomas B. Bair, Terry A. Braun, Todd E. Scheetz
XenoCluster: A Grid Computing Approach to Finding Ancient Evolutionary Genetic Anomalies. PaCT (2005)
Todd E. Scheetz, Nishank Trivedi, Chad A. Roberts, Tamara Kucaba, Brian Berger, Natalie L. Robinson, Clayton L. Birkett, Allen J. Gavin, Brian O'Leary, Terry A. Braun, Maria F. Bonaldo, John P. Robinson, Val C. Sheffield, Marcelo Bento Soares, Thomas L. Casavant
ESTprep: Preprocessing CDNA Sequence Reads. Bioinform. 19 (11) (2003)
Nishank Trivedi, Kevin T. Pedretti, Terry A. Braun, Todd E. Scheetz, Thomas L. Casavant
Alternative Parallelization Strategies in EST Clustering. PaCT (2003)
Terry A. Braun, Todd E. Scheetz, Gregg Webster, Abe Clark, Edwin M. Stone, Val C. Sheffield, Thomas L. Casavant
Identifying Candidate Disease Genes with High-Performance Computing. J. Supercomput. 26 (1) (2003)
Allen J. Gavin, Todd E. Scheetz, Chad A. Roberts, Brian O'Leary, Terry A. Braun, Val C. Sheffield, Marcelo Bento Soares, John P. Robinson, Thomas L. Casavant
Pooled library tissue tags for EST-based gene discovery. Bioinform. 18 (9) (2002)
Nishank Trivedi, Jared Bischof, Steve Davis, Kevin T. Pedretti, Todd E. Scheetz, Terry A. Braun, Chad A. Roberts, Natalie L. Robinson, Val C. Sheffield, Marcelo Bento Soares, Thomas L. Casavant
Parallel creation of non-redundant gene indices from partial mRNA transcripts. Future Gener. Comput. Syst. 18 (6) (2002)
Andrew B. Williams, Todd A. Krygowski, Thomas L. Casavant
I-DOCS: Distributed Agent-Assisted Knowledge Fusion for Disease Gene Discovery. ICPADS (2001)
R. C. Braun, Kevin T. Pedretti, Thomas L. Casavant, Todd E. Scheetz, Clayton L. Birkett, Chad A. Roberts
Parallelization of local BLAST service on workstation clusters. Future Gener. Comput. Syst. 17 (6) (2001)
Thomas L. Casavant, Terry A. Braun, Sureshkumar Kaliannan, Todd E. Scheetz, Kyle J. Munn, Clayton L. Birkett
A parallel/distributed architecture for hierarchically heterogeneous web-based cooperative applications. Future Gener. Comput. Syst. 17 (6) (2001)
Kevin T. Pedretti, Todd E. Scheetz, Terry A. Braun, Chad A. Roberts, Natalie L. Robinson, Thomas L. Casavant
A Parallel Expressed Sequence Tag (EST) Clustering Program. PaCT (2001)
Thomas L. Casavant, Todd E. Scheetz, Terry A. Braun, Kyle J. Munn, Sureshkumar Kaliannan
A Parallel/Distributed Srchitecture for Hierarcally Heterogeneous Web-Based Cooperative Applications. HPCN Europe (1999)
Kevin T. Pedretti, Thomas L. Casavant, R. C. Braun, Todd E. Scheetz, Clayton L. Birkett, Chad A. Roberts
Three Complementary Approaches to Parallelization of Local BLAST Service on Workstation Clusters (invited paper). PaCT (1999)
Todd E. Scheetz, Terry A. Braun, Kyle J. Munn, Edwin M. Stone, Val C. Sheffield, Thomas L. Casavant
GenoMap: A Distributed System for Unifying Genotyping and Genetic Linkage Analysis. Parallel Comput. 24 (9-10) (1998)
Richard D. Dietz, Thomas L. Casavant, Todd E. Scheetz, Terry A. Braun, Mark S. Andersland
Modeling the impact of run-time uncertainty on optimal computation scheduling using feedback. ICPP (1997)
Richard D. Dietz, Thomas L. Casavant, Todd E. Scheetz, Terry A. Braun, Mark S. Andersland
Using Run-Time Uncertainty to Robustly Schedule Parallel Computation. PaCT (1997)
Volker Strumpen, Balkrishna Ramkumar, Thomas L. Casavant, Sudhakar M. Reddy
Perspectives on high performance network computing. Future Gener. Comput. Syst. 12 (5) (1997)
Todd E. Scheetz, Julie A. Gannon, Richard D. Dietz, Terry A. Braun, Thomas L. Casavant, Mark S. Andersland
Accounting for Uncertainty in the Recovers of Traces for Parallel Computing Systems. Parcella (1996)
Eugene V. Zima, Karthi R. Vadivelu, Thomas L. Casavant
Mapping Techniques for Parallel Evaluation of Chains of Recurrences. IPPS (1996)
Volker Strumpen, Balkrishna Ramkumar, Thomas L. Casavant, Sudhakar M. Reddy
Perspectives for High Performance Computing in Workstation Networks. HPCN Europe (1996)
Volker Strumpen, Thomas L. Casavant
Implementing communication latency hiding in high-latency computer networks. HPCN Europe (1995)
Julie A. Gannon, K. J. Williams, Mark S. Andersland, Thomas L. Casavant, J. E. Lummp Jr.
Trace Recovery in Multi-Processing Systems: Architectural Considerations. ICPP (2) (1994)
Thomas L. Casavant, Chi-Yuan Chin, Wen-Tsuen Chen, Kang G. Shin, Earl E. Swartzlander Jr., Joseph E. Urban
What Types of Research Papers Should We Be Writing? ICPADS (1994)
Julie A. Gannon, K. J. Williams, Mark S. Andersland, J. E. Lummp Jr., Thomas L. Casavant
Using Perturbation Tracking to Compensate for Intrusion in Message-Passing Systems. ICDCS (1994)
Volker Strumpen, Thomas L. Casavant
Exploting communication Latency Hiding for Parallel Network. ICPADS (1994)
Thomas L. Casavant, James Arthur Kohl
The IMPROV Meta-Tool Design Methodology for Visualization of Parallel Programs. MASCOTS (1993)
Thomas L. Casavant
Tools and Methods for Visualization of Parallel Systems and Computations - Guest Editor's Introduction. J. Parallel Distributed Comput. 18 (2) (1993)
D. L. Bright, Samuel A. Fineberg, Brent H. Pease, M. L. Roderick, S. Sundaram, Thomas L. Casavant
Critical Performance Path Analysis, and Efficient Code Generation Issues, for the Seamless Architecture. IPPS (1993)
Samuel A. Fineberg, Thomas L. Casavant, Brent H. Pease
Seamless - a latency-tolerant RISC-based multiprocessor architecture. ISCA (1992)
Howard Jay Siegel, Seth Abraham, William L. Bain, Kenneth E. Batcher, Thomas L. Casavant, Doug DeGroot, Jack B. Dennis, David C. Douglas, Tse-Yun Feng, James R. Goodman, Alan Huang, Harry F. Jordan, J. Robert Jamp, Yale N. Patt, Alan Jay Smith, James E. Smith, Lawrence Snyder, Harold S. Stone, Russ Tuck, Benjamin W. Wah
Report of the Purdue Workshop on Grand Challenges in Computer Architecture for the Support of High Performance Computing. J. Parallel Distributed Comput. 16 (3) (1992)
Mikhail J. Atallah, Christina Lock Black, Dan C. Marinescu, Howard Jay Siegel, Thomas L. Casavant
Models and Algorithms for Coscheduling Compute-Intensive Tasks on a Network of Workstations. J. Parallel Distributed Comput. 16 (4) (1992)
Samuel A. Fineberg, Thomas L. Casavant
A Preliminary Performance Evaluation of the Seamless Parallel Processing System Architecture. ICPP (1) (1992)
James Arthur Kohl, Thomas L. Casavant
A software engineering, visualization methodology for parallel processing systems. COMPSAC (1992)
Yiannis E. Papelis, Thomas L. Casavant
Specification and Analysis of Parallel/Distributed Software and Systems by Petri Nets With Transition Enabling Functions. IEEE Trans. Software Eng. 18 (3) (1992)
Samuel A. Fineberg, Thomas L. Casavant, Brent H. Pease
The Seamless Approach to Reconciling Communication and Locality in Distributed-Memory Parallel Systems. IPPS (1992)
Mukesh Singhal, Thomas L. Casavant
Distributed Computing Systems (Guest Editors' Introduction). Computer 24 (8) (1991)
Samuel A. Fineberg, Thomas L. Casavant, Howard Jay Siegel
Experimental Analysis of a Mixed-Mode Parallel Architecture Using Bitonic Sequence Sorting. J. Parallel Distributed Comput. 11 (3) (1991)
James E. Lumpp Jr., Roger K. Shultz, Thomas L. Casavant
Design of a system for software testing and debugging for multiprocessor avionics systems. COMPSAC (1991)
Mikhail J. Atallah, Christina Lock, Dan C. Marinescu, Howard Jay Siegel, Thomas L. Casavant
Co-scheduling compute-intensive tasks on a network of workstations: model and algorithms. ICDCS (1991)
Yiannis E. Papelis, Thomas L. Casavant
XPAT: An Interactive Graphical Tool for Synthesis of Concurrent Software Using Petri Nets. ICPP (2) (1991)
James E. Lumpp Jr., Samuel A. Fineberg, Wayne G. Nation, Thomas L. Casavant, Edward C. Bronson, Howard Jay Siegel, Pierre H. Pero, Thomas Schwederski, Dan C. Marinescu
CAPS: A Coding Aid For PASM. Commun. ACM 34 (11) (1991)
James Arthur Kohl, Thomas L. Casavant
Use of PARADISE: A Meta-Tool for Visualizing Parallel Systems. IPPS (1991)
Thomas L. Casavant, Peter C. Bates, Thomas Bemmerl, Gary M. Koob, Daniel A. Reed, Zary Segall
Debugging and performance monitoring for distributed systems: problems and prospects. ICDCS (1991)
Mark S. Andersland, Thomas L. Casavant
Recovering Unconrupted Event Traces from Corrupted Event Traces in Parallel/Distributed Computing Systems. ICPP (2) (1991)
Dan C. Marinescu, James E. Lumpp Jr., Thomas L. Casavant, Howard Jay Siegel
Models for Monitoring and Debugging Tools for Parallel and Distributed Software. J. Parallel Distributed Comput. 9 (2) (1990)
Samuel A. Fineberg, Thomas L. Casavant, Howard Jay Siegel
Experimental analysis of communication/data-conditional aspects of a mixed-mode parallel architecture via synthetic computations. SC (1990)
Thomas L. Casavant, Jon G. Kuhl
A Communicating Finite Automata Approach to Modeling Distributed Computation and Its Application to Distributed Decision-Making. IEEE Trans. Computers 39 (5) (1990)
Yiannis E. Papelis, Thomas L. Casavant
Mathematical transformation of Petri-nets for development of parallel/distributed programs. COMPSAC (1990)
Edward C. Bronson, Thomas L. Casavant, Leah H. Jamieson
Experimental Application-Driven Architecture Analysis of an SIMD/MIMD Parallel Processing System. IEEE Trans. Parallel Distributed Syst. 1 (2) (1990)
Silvio Picano, Thomas L. Casavant
An Experimental Analysis of Image Correlation on Shared versus Non-Shared Memory MIMD Parallel Computers. ICPP (3) (1990)
Thomas Schwederski, Howard Jay Siegel, Thomas L. Casavant
Optimizing Task Migration Transfers Using Multistage Cube Networks. ICPP (1) (1990)
Samuel A. Fineberg, Thomas L. Casavant, Howard Jay Siegel
Experimental Analysis of a Mixed-Mode Parallel Architecture Performing Sequence Sorting. ICPP (3) (1990)
James E. Lumpp Jr., Howard Jay Siegel, Dan C. Marinescu, Thomas L. Casavant
Specification and Identification of Events for Debugging and Performance Monitoring of Distributed Multiprocessor Systems. ICDCS (1990)
Edward C. Bronson, Thomas L. Casavant, Leah H. Jamieson
Experimental analysis of multi-mode fast Fourier transforms on the PASM parallel processing system. ICASSP (1989)
Thomas Schwederski, Howard Jay Siegel, Thomas L. Casavant
Task Migration Transfers in Multistage Cube Based Parallel Systems. ICPP (1) (1989)
Edward C. Bronson, Thomas L. Casavant, Leah H. Jamieson
Experimental Application-Driven Architecture Analysis of an SIMD/MIMD Parallel Processing System. ICPP (1) (1989)
Dan C. Marinescu, James E. Lumpp Jr., Thomas L. Casavant, Howard Jay Siegel
A model for monitoring and debugging parallel and distributed software. COMPSAC (1989)
Michael A. McSherry, Thomas L. Casavant
Software routing support for task migration in hypercube multiprocessor systems. COMPSAC (1989)
Thomas L. Casavant
Low-level programming of parallel supercomputers. COMPSAC (1988)
Thomas L. Casavant, Jon G. Kuhl
Effects of Response and Stability on Scheduling in Distributed Computing Systems. IEEE Trans. Software Eng. 14 (11) (1988)
Samuel A. Fineberg, Thomas L. Casavant, Thomas Schwederski, Howard Jay Siegel
Non-Deterministic Instruction Time Experiments on the PASM System Prototype. ICPP (1) (1988)
Thomas L. Casavant, Jon G. Kuhl
A Taxonomy of Scheduling in General-Purpose Distributed Computing Systems. IEEE Trans. Software Eng. 14 (2) (1988)
M. J. McPheters Jr., Thomas L. Casavant
Experimental analysis of SIMD recursive digital filtering on the PASM system prototype. COMPSAC (1988)
Thomas L. Casavant, Jon G. Kuhl
Analysis of Three Dynamic Distributed Load-Balancing Strategies with Varying Global Information Requirements. ICDCS (1987)
Thomas L. Casavant, Jon G. Kuhl
A Formal Model of Distributed Decision-Making and Its Application to Distributed Load Balancing. ICDCS (1986)