Jaak Vilo

Publication Activity (10 Years)

Years Active: 1992-2024
Publications (10 Years): 7

Top Topics

Functional Analysis

Top Venues

Nucleic Acids Res.

Publications

Markus Haug, Marek Oja, Maarja Pajusalu, Kerli Mooses, Sulev Reisberg, Jaak Vilo, Antonio Fernández Giménez, Thomas Falconer, Ana Danilovic, Filip Maljkovic, Dalia Dawoud, Raivo Kolde
Markov modeling for cost-effectiveness using federated health data network. J. Am. Medical Informatics Assoc. 31 (5) (2024)
Liis Kolberg, Uku Raudvere, Ivan Kuzmin, Priit Adler, Jaak Vilo, Hedi Peterson
g:Profiler - interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update). Nucleic Acids Res. 51 (W1) (2023)
Dmytro Fishman, Ivan Kuzmin, Priit Adler, Jaak Vilo, Hedi Peterson
PAWER: protein array web exploreR. BMC Bioinform. 21 (1) (2020)
Liis Kolberg, Uku Raudvere, Ivan Kuzmin, Jaak Vilo, Hedi Peterson
gprofiler2 - an R package for gene list functional enrichment analysis and namespace conversion toolset g:Profiler. F1000Research 9 (2020)
Uku Raudvere, Liis Kolberg, Ivan Kuzmin, Tambet Arak, Priit Adler, Hedi Peterson, Jaak Vilo
g: Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update). Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Raivo Kolde, Kaspar Märtens, Kaie Lokk, Sven Laur, Jaak Vilo
seqlm: an MDL based method for identifying differentially methylated regions in high density methylation array data. Bioinform. 32 (17) (2016)
Jüri Reimand, Tambet Arak, Priit Adler, Liis Kolberg, Sulev Reisberg, Hedi Peterson, Jaak Vilo
g: Profiler - a web server for functional interpretation of gene lists (2016 update). Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Tauno Metsalu, Jaak Vilo
ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Raivo Kolde, Jaak Vilo
GOsummaries: an R Package for Visual Functional Annotation of Experimental Data. F1000Research 4 (2015)
Jonathan G. Lees, Jean-Karim Hériché, Ian Morilla, José María Fernández, Priit Adler, Martin Krallinger, Jaak Vilo, Alfonso Valencia, Jan Ellenberg, Juan A. G. Ranea, Christine A. Orengo
FUN-L: gene prioritization for RNAi screens. Bioinform. 31 (12) (2015)
Liina Kamm, Dan Bogdanov, Sven Laur, Jaak Vilo
A new way to protect privacy in large-scale genome-wide association studies. Bioinform. 29 (7) (2013)
Raivo Kolde, Sven Laur, Priit Adler, Jaak Vilo
Robust rank aggregation for gene list integration and meta-analysis. Bioinform. 28 (4) (2012)
Anna Leontjeva, Konstantin Tretyakov, Jaak Vilo, Taavi Tamkivi
Fraud Detection: Methods of Analysis for Hypergraph Data. ASONAM (2012)
Konstantin Tretyakov, Abel Armas-Cervantes, Luciano García-Bañuelos, Jaak Vilo, Marlon Dumas
Fast fully dynamic landmark-based estimation of shortest path distances in very large graphs. CIKM (2011)
Jüri Reimand, Tambet Arak, Jaak Vilo
g: Profiler - a web server for functional interpretation of gene lists (2011 update). Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Einar Meister, Jaak Vilo, Neeme Kahusk
National Programme for Estonian Language Technology: a Pre-final Summary. Baltic HLT (2010)
Meelis Kull, Konstantin Tretyakov, Jaak Vilo
An Evolutionary Model of DNA Substring Distribution. Algorithms and Applications (2010)
Siim Orasmaa, Reina Käärik, Jaak Vilo, Tiit Hennoste
Information Retrieval of Word Form Variants in Spoken Language Corpora Using Generalized Edit Distance. LREC (2010)
Darya Krushevskaya, Hedi Peterson, Jüri Reimand, Meelis Kull, Jaak Vilo
VisHiC - hierarchical functional enrichment analysis of microarray data. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Einar Meister, Jaak Vilo
Strengthening the Estonian Language Technology. LREC (2008)
Margus Jäger, Liina Kamm, Darja Krushevskaja, Harry-Anton Talvik, Janno Veldemann, Andres Vilgota, Jaak Vilo
Flexible Database Platform for Biomedical Research with Multiple User Interfaces and a Universal Query Engine. DB&IS (2008)
Jüri Reimand, Laur Tooming, Hedi Peterson, Priit Adler, Jaak Vilo
GraphWeb: mining heterogeneous biological networks for gene modules with functional significance. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Meelis Kull, Jaak Vilo
Fast approximate hierarchical clustering using similarity heuristics. BioData Min. 1 (2008)
Priit Adler, Jüri Reimand, Jürgen Jänes, Raivo Kolde, Hedi Peterson, Jaak Vilo
KEGGanim: pathway animations for high-throughput data. Bioinform. 24 (4) (2008)
Jüri Reimand, Meelis Kull, Hedi Peterson, Jaanus Hansen, Jaak Vilo
g: Profiler - a web-based toolset for functional profiling of gene lists from large-scale experiments. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Misha Kapushesky, Patrick Kemmeren, Aedín C. Culhane, Steffen Durinck, Jan Ihmels, Christine Körner, Meelis Kull, Aurora Torrente, Ugis Sarkans, Jaak Vilo, Alvis Brazma
Expression Profiler: next generation - an online platform for analysis of microarray data. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Alvis Brazma, Helen E. Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Jaak Vilo, Niran Abeygunawardena, Ele Holloway, Misha Kapushesky, Patrick Kemmeren, Gonzalo Garcia Lara, Ahmet Oezcimen, Philippe Rocca-Serra, Susanna-Assunta Sansone
ArrayExpress - a public repository for microarray gene expression data at the EBI. Nucleic Acids Res. 31 (1) (2003)
Kimmo Palin, Esko Ukkonen, Alvis Brazma, Jaak Vilo
Correlating gene promoters and expression in gene disruption experiments. ECCB (2002)
Johan Rung, Thomas Schlitt, Alvis Brazma, K. Freivalds, Jaak Vilo
Building and analysing genome-wide gene disruption networks. ECCB (2002)
Steffen Möller, Jaak Vilo, Michael D. R. Croning
Prediction of the coupling specificity of G protein coupled receptors to their G proteins. ISMB (Supplement of Bioinformatics) (2001)
Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Robinson, Esko Ukkonen
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data. ISMB (2000)
Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen
Pattern Discovery in Biosequences. ICGI (1998)
Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen
Predicting gene regulatory elements from their expression data in the complete yeast genome. German Conference on Bioinformatics (1998)
Alvis Brazma, Jaak Vilo, Esko Ukkonen
Finding transcription factor binding site combinations in the yeast genome. German Conference on Bioinformatics (1997)
Alvis Brazma, Jaak Vilo, Esko Ukkonen, Kimmo Valtonen
Data Mining for Regulatory Elements in Yeast Genome. ISMB (1997)
Alvis Brazma, Inge Jonassen, Esko Ukkonen, Jaak Vilo
Discovering Patterns and Subfamilies in Biosequences. ISMB (1996)
Alvis Brazma, Esko Ukkonen, Jaak Vilo
Discovering Unbounded Unions of Regular Pattern Languages from Positive Examples (Extended Abstract). ISAAC (1996)
Jyrki Kivinen, Heikki Mannila, Esko Ukkonen, Jaak Vilo
An ALgorithm for Learning Hierarchical Classifiers. ECML (1994)
Jaak Vilo
Implementing Attribute Grammars by Computational Models. PLILP (1992)