Aedín C. Culhane

Publication Activity (10 Years)

Years Active: 2002-2023
Publications (10 Years): 3

Top Topics

Synthetic Datasets

Contingency Tables

Experimental Results On Real World

Top Venues

Briefings Bioinform.

PLoS Comput. Biol.

Publications

Kelly B. Eckenrode, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedín C. Culhane, Laurent Gatto, Vincent J. Carey, Martin Morgan, Davide Risso, Levi Waldron
Curated single cell multimodal landmark datasets for R/Bioconductor. PLoS Comput. Biol. 19 (8) (2023)
Lavanya Kannan, Marcel Ramos, Angela Re, Nehme Hachem, Zhaleh Safikhani, Deena M. A. Gendoo, Sean R. Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe-Kains, Levi Waldron
Public data and open source tools for multi-assay genomic investigation of disease. Briefings Bioinform. 17 (4) (2016)
Chen Meng, Oana A. Zeleznik, Gerhard G. Thallinger, Bernhard Küster, Amin Moghaddas Gholami, Aedín C. Culhane
Dimension reduction techniques for the integrative analysis of multi-omics data. Briefings Bioinform. 17 (4) (2016)
Chen Meng, Bernhard Küster, Aedín C. Culhane, Amin Moghaddas Gholami
A multivariate approach to the integration of multi-omics datasets. BMC Bioinform. 15 (2014)
Markus S. Schröder, Daniel Gusenleitner, John Quackenbush, Aedín C. Culhane, Benjamin Haibe-Kains
RamiGO: an R/Bioconductor package providing an AmiGO Visualize interface. Bioinform. 29 (5) (2013)
Andrew H. Beck, Nicholas W. Knoblauch, Marco M. Hefti, Jennifer Kaplan, Stuart J. Schnitt, Aedín C. Culhane, Markus S. Schröder, Thomas Risch, John Quackenbush, Benjamin Haibe-Kains
Significance Analysis of Prognostic Signatures. PLoS Comput. Biol. 9 (1) (2013)
Aedín C. Culhane, Markus S. Schröder, Razvan Sultana, Shaita C. Picard, Enzo N. Martinelli, Caroline Kelly, Benjamin Haibe-Kains, Misha Kapushesky, Anne-Alyssa St Pierre, William Flahive, Kermshlise C. Picard, Daniel Gusenleitner, Gerald Papenhausen, Niall O'Connor, Mick Correll, John Quackenbush
GeneSigDB: a manually curated database and resource for analysis of gene expression signatures. Nucleic Acids Res. 40 (Database-Issue) (2012)
Misha Kapushesky, Tomasz Adamusiak, Tony Burdett, Aedín C. Culhane, Anna Farne, Alexey Filippov, Ele Holloway, Andrey Klebanov, Nataliya Kryvych, Natalja Kurbatova, Pavel Kurnosov, James Malone, Olga Melnichuk, Robert Petryszak, Nikolay Pultsin, Gabriella Rustici, Andrew Tikhonov, Ravensara S. Travillian, Eleanor Williams, Andrey Zorin, Helen E. Parkinson, Alvis Brazma
Gene Expression Atlas update - a value-added database of microarray and sequencing-based functional genomics experiments. Nucleic Acids Res. 40 (Database-Issue) (2012)
Shannan J. Ho Sui, Kimberly Begley, Dorothy Reilly, Brad Chapman, Ray McGovern, Philippe Rocca-Serra, Eamonn Maguire, Gabriel M. Altschuler, Terah A. A. Hansen, Ramakrishna Sompallae, Andrei Krivtsov, Ramesh A. Shivdasani, Scott A. Armstrong, Aedín C. Culhane, Mick Correll, Susanna-Assunta Sansone, Oliver Hofmann, Winston Hide
The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons. Nucleic Acids Res. 40 (Database-Issue) (2012)
Daniel Gusenleitner, Eleanor Howe, Stefan Bentink, John Quackenbush, Aedín C. Culhane
iBBiG: iterative binary bi-clustering of gene sets. Bioinform. 28 (19) (2012)
Markus S. Schröder, Aedín C. Culhane, John Quackenbush, Benjamin Haibe-Kains
: an R/Bioconductor package for performance assessment and comparison of survival models. Bioinform. 27 (22) (2011)
Aedín C. Culhane, Thomas Schwarzl, Razvan Sultana, Kermshlise C. Picard, Shaita C. Picard, Tim H. Lu, Katherine R. Franklin, Simon J. French, Gerald Papenhausen, Mick Correll, John Quackenbush
GeneSigDB - a curated database of gene expression signatures. Nucleic Acids Res. 38 (Database-Issue) (2010)
Ian B. Jeffery, Stephen F. Madden, Paul A. McGettigan, Guy Perrière, Aedín C. Culhane, Desmond G. Higgins
Integrating transcription factor binding site information with gene expression datasets. Bioinform. 23 (3) (2007)
Ian B. Jeffery, Desmond G. Higgins, Aedín C. Culhane
Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data. BMC Bioinform. 7 (2006)
Aedín C. Culhane, Jean Thioulouse, Guy Perrière, Desmond G. Higgins
MADE4: an R package for multivariate analysis of gene expression data. Bioinform. 21 (11) (2005)
Florent Baty, Michel P. Bihl, Guy Perrière, Aedín C. Culhane, Martin H. Brutsche
Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data. BMC Bioinform. 6 (2005)
Misha Kapushesky, Patrick Kemmeren, Aedín C. Culhane, Steffen Durinck, Jan Ihmels, Christine Körner, Meelis Kull, Aurora Torrente, Ugis Sarkans, Jaak Vilo, Alvis Brazma
Expression Profiler: next generation - an online platform for analysis of microarray data. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Aedín C. Culhane, Guy Perrière, Desmond G. Higgins
Cross-platform comparison and visualisation of gene expression data using co-inertia analysis. BMC Bioinform. 4 (2003)
Aedín C. Culhane, Guy Perrière, Elizabeth C. Considine, Thomas G. Cotter, Desmond G. Higgins
Between-group analysis of microarray data. Bioinform. 18 (12) (2002)