Zhaleh Safikhani

Publication Activity (10 Years)

Years Active: 2016-2022
Publications (10 Years): 10

Top Topics

Pareto Optimality

Statistical Approaches

Transfer Learning

Graph Transduction

Top Venues

Mach. Learn. Sci. Technol.

Publications

Petr Smirnov, Ian Smith, Zhaleh Safikhani, Wail Ba-alawi, Farnoosh Khodakarami, Eva Lin, Yihong Yu, Scott Martin, Janosch Ortmann, Tero Aittokallio, Marc Hafner, Benjamin Haibe-Kains
Evaluation of statistical approaches for association testing in noisy drug screening data. BMC Bioinform. 23 (1) (2022)
Seyed Ali Madani Tonekaboni, Andrew E. Brereton, Zhaleh Safikhani, Andreas Windemuth, Benjamin Haibe-Kains, Stephen MacKinnon
Learning across label confidence distributions using Filtered Transfer Learning. ICMLA (2020)
Andrew E. Brereton, Stephen MacKinnon, Zhaleh Safikhani, Shawn Reeves, Sana Alwash, Vijay Shahani, Andreas Windemuth
Predicting drug properties with parameter-free machine learning: Pareto-Optimal Embedded Modeling (POEM). CoRR (2020)
Andrew E. Brereton, Stephen MacKinnon, Zhaleh Safikhani, Shawn Reeves, Sana Alwash, Vijay Shahani, Andreas Windemuth
Predicting drug properties with parameter-free machine learning: pareto-optimal embedded modeling (POEM). Mach. Learn. Sci. Technol. 1 (2) (2020)
Seyed Ali Madani Tonekaboni, Andrew E. Brereton, Zhaleh Safikhani, Andreas Windemuth, Benjamin Haibe-Kains, Stephen MacKinnon
Learning across label confidence distributions using Filtered Transfer Learning. CoRR (2020)
Fupan Yao, Seyed Ali Madani Tonekaboni, Zhaleh Safikhani, Petr Smirnov, Nehme El-Hachem, Mark Freeman, Venkata Satya Kumar Manem, Benjamin Haibe-Kains
Tissue specificity of in vitro drug sensitivity. J. Am. Medical Informatics Assoc. 25 (2) (2018)
Petr Smirnov, Victor Kofia, Alexander Maru, Mark Freeman, Chantal Ho, Nehme El-Hachem, George-Alexandru Adam, Wail Ba-alawi, Zhaleh Safikhani, Benjamin Haibe-Kains
PharmacoDB: an integrative database for mining in vitro anticancer drug screening studies. Nucleic Acids Res. 46 (Database-Issue) (2018)
Petr Smirnov, Zhaleh Safikhani, Nehme Hachem, Dong Wang, Adrian She, Catharina Olsen, Mark Freeman, Heather Selby, Deena M. A. Gendoo, Patrick Grossmann, Andrew H. Beck, Hugo J. W. L. Aerts, Mathieu Lupien, Anna Goldenberg, Benjamin Haibe-Kains
PharmacoGx: an R package for analysis of large pharmacogenomic datasets. Bioinform. 32 (8) (2016)
Lavanya Kannan, Marcel Ramos, Angela Re, Nehme Hachem, Zhaleh Safikhani, Deena M. A. Gendoo, Sean R. Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe-Kains, Levi Waldron
Public data and open source tools for multi-assay genomic investigation of disease. Briefings Bioinform. 17 (4) (2016)
Zhaleh Safikhani, Nehme Hachem, Petr Smirnov, Mark Freeman, Anna Goldenberg, Nicolai J. Birkbak, Andrew H. Beck, Hugo J. W. L. Aerts, John Quackenbush, Benjamin Haibe-Kains
. reply. Nat. 540 (7631) (2016)