Sean R. Davis

Publication Activity (10 Years)

Years Active: 2004-2022
Publications (10 Years): 6

Top Topics

Semantically Rich

Functional Genomics

Top Venues

Briefings Bioinform.

Nucleic Acids Res.

Publications

Arkarachai Fungtammasan, Alexandra Lee, Jaclyn N. Taroni, Kurt Wheeler, Chen-Shan Chin, Sean R. Davis, Casey S. Greene
Ten simple rules for large-scale data processing. PLoS Comput. Biol. 18 (2) (2022)
Shweta Gopaulakrishnan, Samuela Pollack, BJ Stubbs, Hervé Pagès, John Readey, Sean R. Davis, Levi Waldron, Martin Morgan, Vincent J. Carey
restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor. F1000Research 8 (2019)
Shian Su, Vincent J. Carey, Lori A. Shepherd, Matthew E. Ritchie, Martin T. Morgan, Sean R. Davis
package ecosystem. F1000Research 8 (2019)
Sean R. Davis, Marcel Ramos, Lori A. Shepherd, Nitesh Turaga, Ludwig Geistlinger, Martin T. Morgan, Benjamin Haibe-Kains, Levi Waldron
Orchestrating a community-developed computational workshop and accompanying training materials. F1000Research 7 (2018)
Hongen Zhang, Paul S. Meltzer, Sean R. Davis
caOmicsV: an R package for visualizing multidimensional cancer genomic data. BMC Bioinform. 17 (2016)
Lavanya Kannan, Marcel Ramos, Angela Re, Nehme Hachem, Zhaleh Safikhani, Deena M. A. Gendoo, Sean R. Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe-Kains, Levi Waldron
Public data and open source tools for multi-assay genomic investigation of disease. Briefings Bioinform. 17 (4) (2016)
Yuelin Zhu, Robert M. Stephens, Paul S. Meltzer, Sean R. Davis
SRAdb: query and use public next-generation sequencing data from within R. BMC Bioinform. 14 (2013)
Tanya Barrett, Stephen E. Wilhite, Pierre Ledoux, Carlos Evangelista, Irene F. Kim, Maxim Tomashevsky, Kimberly A. Marshall, Katherine H. Phillippy, Patti M. Sherman, Michelle Holko, Andrey Yefanov, Hyeseung Lee, Naigong Zhang, Cynthia L. Robertson, Nadezhda Serova, Sean R. Davis, Alexandra Soboleva
NCBI GEO: archive for functional genomics data sets - update. Nucleic Acids Res. 41 (Database-Issue) (2013)
Hongen Zhang, Paul S. Meltzer, Sean R. Davis
RCircos: an R package for Circos 2D track plots. BMC Bioinform. 14 (2013)
Yuelin Zhu, Sean R. Davis, Robert M. Stephens, Paul S. Meltzer, Yidong Chen
GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus. Bioinform. 24 (23) (2008)
Sean R. Davis, Paul S. Meltzer
GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor. Bioinform. 23 (14) (2007)
Steffen Durinck, Yves Moreau, Arek Kasprzyk, Sean R. Davis, Bart De Moor, Alvis Brazma, Wolfgang Huber
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. Bioinform. 21 (16) (2005)
Paul S. Meltzer, Sean R. Davis, Kristin Baird, Yidong Chen
Are We There Yet? Genomic Profiling and Mechanism in Cancer Research. CSB (2004)