Robert M. Stephens

Publication Activity (10 Years)

Years Active: 2001-2016
Publications (10 Years): 1

Top Topics

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Top Venues

Nucleic Acids Res.

Publications

Ma Liang, Castle Raley, Xin Zheng, Geetha Kutty, Emile Gogineni, Brad T. Sherman, Qiang Sun, Xiongfong Chen, Thomas Skelly, Kristine Jones, Robert M. Stephens, Bin Zhou, William W. Lau, Calvin A. Johnson, Tomozumi Imamichi, Minkang Jiang
Distinguishing highly similar gene isoforms with a clustering-based bioinformatics analysis of PacBio single-molecule long reads. BioData Min. 9 (2016)
Hue Vuong, Robert M. Stephens, Natalia Volfovsky
AVIA: an interactive web-server for annotation, visualization and impact analysis of genomic variations. Bioinform. 30 (7) (2014)
Yuelin Zhu, Robert M. Stephens, Paul S. Meltzer, Sean R. Davis
SRAdb: query and use public next-generation sequencing data from within R. BMC Bioinform. 14 (2013)
Regina Z. Cer, Duncan E. Donohue, Uma Mudunuri, Nuri A. Temiz, Michael A. Loss, Nathan J. Starner, Goran N. Halusa, Natalia Volfovsky, Ming Yi, Brian T. Luke, Albino Bacolla, Jack R. Collins, Robert M. Stephens
Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools. Nucleic Acids Res. 41 (Database-Issue) (2013)
Xiaoli Jiao, Brad T. Sherman, Da Wei Huang, Robert M. Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki
DAVID-WS: a stateful web service to facilitate gene/protein list analysis. Bioinform. 28 (13) (2012)
Regina Z. Cer, Kevin H. Bruce, Uma Mudunuri, Ming Yi, Natalia Volfovsky, Brian T. Luke, Albino Bacolla, Jack R. Collins, Robert M. Stephens
Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes. Nucleic Acids Res. 39 (Database-Issue) (2011)
Keiko Akagi, Robert M. Stephens, Jingfeng Li, Evgenji Evdokimov, Michael R. Kuehn, Natalia Volfovsky, David E. Symer
MouseIndelDB: a database integrating genomic indel polymorphisms that distinguish mouse strains. Nucleic Acids Res. 38 (Database-Issue) (2010)
Regina Z. Cer, Uma Mudunuri, Robert M. Stephens, Frank J. Lebeda
values for inhibitors of enzyme activity and ligand binding. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Ming Yi, Uma Mudunuri, Anney Che, Robert M. Stephens
Seeking unique and common biological themes in multiple gene lists or datasets: pathway pattern extraction pipeline for pathway-level comparative analysis. BMC Bioinform. 10 (2009)
Uma Mudunuri, Anney Che, Ming Yi, Robert M. Stephens
bioDBnet: the biological database network. Bioinform. 25 (4) (2009)
Yuelin Zhu, Sean R. Davis, Robert M. Stephens, Paul S. Meltzer, Yidong Chen
GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus. Bioinform. 24 (23) (2008)
Da Wei Huang, Brad T. Sherman, Qina Tan, Joseph Kir, David Liu, David Bryant, Yongjian Guo, Robert M. Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki
DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Brad T. Sherman, Da Wei Huang, Qina Tan, Yongjian Guo, Stephan Bour, David Liu, Robert M. Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki
DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis. BMC Bioinform. 8 (2007)
G. W. Patton, Robert M. Stephens, I. A. Sidorov, X. Xiao, Richard A. Lempicki, D. S. Dimitrov, Robert H. Shoemaker, G. Tudor
Transcriptomic response to differentiation induction. BMC Bioinform. 7 (2006)
Ming Yi, Jay D. Horton, Jonathan C. Cohen, Helen H. Hobbs, Robert M. Stephens
WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data. BMC Bioinform. 7 (2006)
Uma Mudunuri, Robert M. Stephens, David Bruining, David Liu, Frank J. Lebeda
botXminer: mining biomedical literature with a new web-based application. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Barry Zeeberg, Haiying Qin, Sudarshan Narasimhan, Margot Sunshine, Hong Cao, David W. Kane, Mark Reimers, Robert M. Stephens, David Bryant, Stanley K. Burt, Eldad Elnekave, Danielle M. Hari, Thomas A. Wynn, Charlotte Cunningham-Rundles, Donn M. Stewart, David Nelson, John N. Weinstein
High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID). BMC Bioinform. 6 (2005)
Keiko Akagi, Takeshi Suzuki, Robert M. Stephens, Nancy A. Jenkins, Neal G. Copeland
RTCGD: retroviral tagged cancer gene database. Nucleic Acids Res. 32 (Database-Issue) (2004)
John S. Garavelli, Zhenglin Hou, Nagarajan Pattabiraman, Robert M. Stephens
The RESID Database of protein structure modifications and the NRL-3D Sequence-Structure Database. Nucleic Acids Res. 29 (1) (2001)