Baris E. Suzek

Publication Activity (10 Years)

Years Active: 2001-2018
Publications (10 Years): 1

Top Topics

Cross Sectional

Medical Imaging

Knowledge Representation

Mass Spectrometry

Top Venues

J. Digit. Imaging

J. Am. Medical Informatics Assoc.

Publications

Erdem Turk, Turkan Arit, Delikanli Mertcan Susus, Ilayda Ucar, Baris E. Suzek
ProSetComp: A Platform for Protein Set Comparisons. BCB (2018)
Baris E. Suzek, Yuqi Wang, Hongzhan Huang, Peter B. McGarvey, Cathy H. Wu
UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches. Bioinform. 31 (6) (2015)
Peter B. McGarvey, Baris E. Suzek, Shruti Rao, Subha Madhavan, James N. Baraniuk, Samir Lababidi, Andrea Sutherland, Richard Forshee
In silico analysis of autoimmune diseases and genetic relationships to vaccination against infectious diseases. BCB (2013)
Andrew J. Buckler, Matt Ouellette, Jovanna Danagoulian, Gary Wernsing, Tiffany Ting Liu, Erica S. Savig, Baris E. Suzek, Daniel L. Rubin, David Paik
Quantitative Imaging Biomarker Ontology (QIBO) for Knowledge Representation of Biomedical Imaging Biomarkers. J. Digit. Imaging 26 (4) (2013)
Chuming Chen, Zhiwen Li, Hongzhan Huang, Baris E. Suzek, Cathy H. Wu
A fast Peptide Match service for UniProt Knowledgebase. Bioinform. 29 (21) (2013)
Andrew J. Buckler, David Paik, Matt Ouellette, Jovanna Danagoulian, Gary Wernsing, Baris E. Suzek
A Novel Knowledge Representation Framework for the Statistical Validation of Quantitative Imaging Biomarkers. J. Digit. Imaging 26 (4) (2013)
Andrew J. Buckler, Tiffany Ting Liu, Erica S. Savig, Baris E. Suzek, Daniel L. Rubin, David Paik
Erratum to: Quantitative Imaging Biomarker Ontology (QIBO) for Knowledge Representation of Biomedical Imaging Biomarkers. J. Digit. Imaging 26 (4) (2013)
Peter B. McGarvey, Sweta Ladwa, Mauricio Oberti, Anca Dana Dragomir, Erin K. Hedlund, David M. Tanenbaum, Baris E. Suzek, Subha Madhavan
Informatics and data quality at collaborative multicenter Breast and Colon Cancer Family Registries. J. Am. Medical Informatics Assoc. 19 (e1) (2012)
Robert R. Freimuth, Elaine T. Freund, Lisa Schick, Mukesh K. Sharma, Grace A. Stafford, Baris E. Suzek, Joyce Hernandez, Jason Hipp, Jenny M. Kelley, Konrad Rokicki, Sue Pan, Andrew J. Buckler, Todd H. Stokes, Anna T. Fernandez, Ian Fore, Kenneth H. Buetow, Juli D. Klemm
Life sciences domain analysis model. J. Am. Medical Informatics Assoc. 19 (6) (2012)
Hongzhan Huang, Peter B. McGarvey, Baris E. Suzek, Raja Mazumder, Jian Zhang, Yongxing Chen, Cathy H. Wu
A comprehensive protein-centric ID mapping service for molecular data integration. Bioinform. 27 (8) (2011)
Eric Jain, Amos Bairoch, Severine Duvaud, Isabelle Phan, Nicole Redaschi, Baris E. Suzek, Maria Jesus Martin, Peter B. McGarvey, Elisabeth Gasteiger
Infrastructure for the life sciences: design and implementation of the UniProt website. BMC Bioinform. 10 (2009)
Wei Tan, Ravi K. Madduri, Kiran Keshav, Baris E. Suzek, Scott Oster, Ian T. Foster
Orchestrating caGrid Services in Taverna. ICWS (2008)
Baris E. Suzek, Hongzhan Huang, Peter B. McGarvey, Raja Mazumder, Cathy H. Wu
UniRef: comprehensive and non-redundant UniProt reference clusters. Bioinform. 23 (10) (2007)
Cathy H. Wu, Rolf Apweiler, Amos Bairoch, Darren A. Natale, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Raja Mazumder, Claire O'Donovan, Nicole Redaschi, Baris E. Suzek
The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res. 34 (Database-Issue) (2006)
Hongzhan Huang, Zhang-Zhi Hu, Baris E. Suzek, Cathy H. Wu
The PIR integrated protein databases and data retrieval system. Data Sci. J. 3 (2004)
Cathy H. Wu, Anastasia N. Nikolskaya, Hongzhan Huang, Lai-Su L. Yeh, Darren A. Natale, Cholanayakanahalli R. Vinayaka, Zhang-Zhi Hu, Raja Mazumder, Sandeep Kumar, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, Leslie Arminski, Yongxing Chen, Jian Zhang, Jorge Louie Cardenas, Sehee Chung, Jorge Castro-Alvear, Georgi Dinkov, Winona C. Barker
PIRSF: family classification system at the Protein Information Resource. Nucleic Acids Res. 32 (Database-Issue) (2004)
Cathy H. Wu, Lai-Su L. Yeh, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, Cholanayakanahalli R. Vinayaka, Jian Zhang, Winona C. Barker
The Protein Information Resource. Nucleic Acids Res. 31 (1) (2003)
Cathy H. Wu, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Robert S. Ledley, Kali C. Lewis, Hans-Werner Mewes, Bruce C. Orcutt, Baris E. Suzek, Akira Tsugita, Cholanayakanahalli R. Vinayaka, Lai-Su L. Yeh, Jian Zhang, Winona C. Barker
The Protein Information Resource: an integrated public resource of functional annotation of proteins. Nucleic Acids Res. 30 (1) (2002)
Baris E. Suzek, Maria D. Ermolaeva, Mark J. Schreiber, Steven Salzberg
A probabilistic method for identifying start codons in bacterial genomes. Bioinform. 17 (12) (2001)