Manolis Maragkakis

Publication Activity (10 Years)

Years Active: 2009-2021
Publications (10 Years): 2

Top Topics

Structured Query Language

Physicochemical Properties

Tandem Mass Spectrometry

Gene Expression

Top Venues

Nucleic Acids Res.

Publications

Christopher T. Lee, Manolis Maragkakis
SamQL: a structured query language and filtering tool for the SAM/BAM file format. BMC Bioinform. 22 (1) (2021)
R. Daniel Kortschak, Josh Bleecher Snyder, Manolis Maragkakis, David L. Adelson
bíogo: a simple high-performance bioinformatics toolkit for the Go language. J. Open Source Softw. 2 (10) (2017)
Maria D. Paraskevopoulou, Georgios Georgakilas, Nikos Kostoulas, Martin Reczko, Manolis Maragkakis, Theodore Dalamagas, Artemis G. Hatzigeorgiou
DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs. Nucleic Acids Res. 41 (Database-Issue) (2013)
Thanasis Vergoulis, Michail Alexakis, Theodore Dalamagas, Manolis Maragkakis, Artemis G. Hatzigeorgiou, Timos K. Sellis
TARCLOUD: A Cloud-Based Platform to Support miRNA Target Prediction. SSDBM (2012)
Thanasis Vergoulis, Ioannis S. Vlachos, Panagiotis Alexiou, George Georgakilas, Manolis Maragkakis, Martin Reczko, Stefanos Gerangelos, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. Nucleic Acids Res. 40 (Database-Issue) (2012)
Ioannis S. Vlachos, Nikos Kostoulas, Thanasis Vergoulis, Georgios Georgakilas, Martin Reczko, Manolis Maragkakis, Maria D. Paraskevopoulou, Kostantinos Prionidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou
DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Martin Reczko, Manolis Maragkakis, Panagiotis Alexiou, Ivo Grosse, Artemis G. Hatzigeorgiou
Functional microRNA targets in protein coding sequences. Bioinform. 28 (6) (2012)
Manolis Maragkakis, Thanasis Vergoulis, Panagiotis Alexiou, Martin Reczko, Kyriaki Plomaritou, Mixail Gousis, Kornilios Kourtis, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou
DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Jan Grau, Daniel Arend, Ivo Grosse, Artemis G. Hatzigeorgiou, Jens Keilwagen, Manolis Maragkakis, Claus Weinholdt, Stefan Posch
Predicting miRNA targets utilizing an Extended Profile HMM. GCB (2010)
Theodore Dalamagas, Tryfon Farmakakis, Manolis Maragkakis, Artemis G. Hatzigeorgiou
FreePub: Collecting and Organizing Scientific Material Using Mindmaps CoRR (2010)
Theodore Dalamagas, Tryfon Farmakakis, Manolis Maragkakis, Artemis G. Hatzigeorgiou
FreePub: Collecting and Organizing Scientific Material Using Mindmaps. SWAT4LS (2010)
Manolis Maragkakis, Martin Reczko, Victor A. Simossis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Theodore Dalamagas, Giorgos Giannopoulos, Georgios I. Goumas, Evangelos Koukis, Kornilios Kourtis, Thanasis Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou
DIANA-microT web server: elucidating microRNA functions through target prediction. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Giorgos L. Papadopoulos, Panagiotis Alexiou, Manolis Maragkakis, Martin Reczko, Artemis G. Hatzigeorgiou
DIANA-mirPath: Integrating human and mouse microRNAs in pathways. Bioinform. 25 (15) (2009)
Panagiotis Alexiou, Manolis Maragkakis, Giorgos L. Papadopoulos, Martin Reczko, Artemis G. Hatzigeorgiou
Lost in translation: an assessment and perspective for computational microRNA target identification. Bioinform. 25 (23) (2009)
Manolis Maragkakis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Martin Reczko, Theodore Dalamagas, Giorgos Giannopoulos, George I. Goumas, Evangelos Koukis, Kornilios Kourtis, Victor A. Simossis, Praveen Sethupathy, Thanasis Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou
Accurate microRNA target prediction correlates with protein repression levels. BMC Bioinform. 10 (2009)