Annie Chateau

ORCID

Publication Activity (10 Years)

Years Active: 2004-2022
Publications (10 Years): 32

Top Venues

University of Auvergne, Clermont-Ferrand, France (PHD)

Education History

University of Auvergne, Clermont-Ferrand, France

PHD

Publications

Tom Davot, Annie Chateau, Rohan Fossé, Rodolphe Giroudeau, Mathias Weller
On a greedy approach for genome scaffolding. Algorithms Mol. Biol. 17 (1) (2022)
Clément Agret, Annie Chateau, Gaëtan Droc, Gautier Sarah, Manuel Ruiz, Alban Mancheron
RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes. J. Open Source Softw. 7 (80) (2022)
Quentin Delorme, Rémy Costa, Yasmine Mansour, Anna-Sophie Fiston-Lavier, Annie Chateau
Involving repetitive regions in scaffolding improvement. J. Bioinform. Comput. Biol. 19 (6) (2021)
Tom Davot, Annie Chateau, Rodolphe Giroudeau, Mathias Weller, Dorine Tabary
Producing Genomic Sequences after Genome Scaffolding with Ambiguous Paths: Complexity, Approximation and Lower Bounds. Algorithmica 83 (7) (2021)
Kleber Padovani de Souza, Roberto Xavier, André C. P. L. F. de Carvalho, Anna Reali, Annie Chateau, Ronnie Alves
Towards a reinforcement learning de novo genome assembler. CoRR (2021)
Annie Chateau, Tom Davot, Manuel Lafond
Efficient assembly consensus algorithms for divergent contig sets. Comput. Biol. Chem. 93 (2021)
Yasmine Mansour, Annie Chateau, Anna-Sophie Fiston-Lavier
BREC: an R package/Shiny app for automatically identifying heterochromatin boundaries and estimating local recombination rates along chromosomes. BMC Bioinform. (6) (2021)
Tom Davot, Annie Chateau, Rodolphe Giroudeau, Mathias Weller
Linearizing Genomes: Exact Methods and Local Search. SOFSEM (2020)
Pijus Simonaitis, Annie Chateau, Krister M. Swenson
A general framework for genome rearrangement with biological constraints. Algorithms Mol. Biol. 14 (1) (2019)
Pijus Simonaitis, Annie Chateau, Krister M. Swenson
Weighted Minimum-Length Rearrangement Scenarios. WABI (2019)
Pierre Cazals, Benoît Darties, Annie Chateau, Rodolphe Giroudeau, Mathias Weller
Power Edge Set and Zero Forcing Set Remain Difficult in Cubic Graphs. IWOCA (2019)
Kleber Padovani de Souza, João Carlos Setubal, André Carlos Ponce de Leon Ferreira de Carvalho, Guilherme Oliveira, Annie Chateau, Ronnie Alves
Machine learning meets genome assembly. Briefings Bioinform. 20 (6) (2019)
Roberto Xavier, Kleber Padovani de Souza, Annie Chateau, Ronnie Alves
Genome Assembly Using Reinforcement Learning. BSB (2019)
Tom Davot, Annie Chateau, Rodolphe Giroudeau, Mathias Weller
New Polynomial-Time Algorithm Around the Scaffolding Problem. AlCoB (2019)
Pijus Simonaitis, Annie Chateau, Krister M. Swenson
A General Framework for Genome Rearrangement with Biological Constraints. RECOMB-CG (2018)
Tom Davot, Annie Chateau, Rodolphe Giroudeau, Mathias Weller
On the Hardness of Approximating Linearization of Scaffolds Sharing Repeated Contigs. RECOMB-CG (2018)
Mathias Weller, Annie Chateau, Clément Dallard, Rodolphe Giroudeau
Scaffolding Problems Revisited: Complexity, Approximation and Fixed Parameter Tractable Algorithms, and Some Special Cases. Algorithmica 80 (6) (2018)
Pijus Simonaitis, Annie Chateau, Krister M. Swenson
A framework for cost-constrained genome rearrangement under Double Cut and Join. CoRR (2018)
Mathias Weller, Annie Chateau, Rodolphe Giroudeau, Jean-Claude König, Valentin Pollet
On residual approximation in solution extension problems. J. Comb. Optim. 36 (4) (2018)
Dorine Tabary, Tom Davot, Mathias Weller, Annie Chateau, Rodolphe Giroudeau
New Results About the Linearization of Scaffolds Sharing Repeated Contigs. COCOA (2018)
Benoît Darties, Nicolas Champseix, Annie Chateau, Rodolphe Giroudeau, Mathias Weller
Complexity and lowers bounds for Power Edge Set Problem. J. Discrete Algorithms (2018)
Mathias Weller, Annie Chateau, Rodolphe Giroudeau
On the Linearization of Scaffolds Sharing Repeated Contigs. COCOA (2) (2017)
Benoît Darties, Annie Chateau, Rodolphe Giroudeau, Mathias Weller
New Insights for Power Edge Set Problem. COCOA (1) (2017)
Benoît Darties, Annie Chateau, Rodolphe Giroudeau, Mathias Weller
Improved Complexity for Power Edge Set Problem. IWOCA (2017)
Clément Dallard, Mathias Weller, Annie Chateau, Rodolphe Giroudeau
Instance Guaranteed Ratio on Greedy Heuristic for Genome Scaffolding. COCOA (2016)
Sèverine Bérard, Annie Chateau, Nicolas Pompidor, Paul Guertin, Anne Bergeron, Krister M. Swenson
Aligning the unalignable: bacteriophage whole genome alignments. BMC Bioinform. 17 (2016)
Adel Ferdjoukh, Eric Bourreau, Annie Chateau, Clémentine Nebut
A Model-Driven Approach to Generate Relevant and Realistic Datasets. SEKE (2016)
Mathias Weller, Annie Chateau, Rodolphe Giroudeau, Jean-Claude König, Valentin Pollet
On Residual Approximation in Solution Extension Problems. COCOA (2016)
Annie Chateau, Rodolphe Giroudeau
A complexity and approximation framework for the maximization scaffolding problem. Theor. Comput. Sci. 595 (2015)
Mathias Weller, Annie Chateau, Rodolphe Giroudeau
On the Complexity of Scaffolding Problems: From Cliques to Sparse Graphs. COCOA (2015)
Mathias Weller, Annie Chateau, Rodolphe Giroudeau
Exact approaches for scaffolding. BMC Bioinform. 16 (S14) (2015)
Adel Ferdjoukh, Anne-Elisabeth Baert, Eric Bourreau, Annie Chateau, Remi Coletta, Clémentine Nebut
Instantiation of Meta-models Constrained with OCL - A CSP Approach. MODELSWARD (2015)
Annie Chateau, Rodolphe Giroudeau
Complexity and Polynomial-Time Approximation Algorithms around the Scaffolding Problem. AlCoB (2014)
Adel Ferdjoukh, Anne-Elisabeth Baert, Annie Chateau, Remi Coletta, Clémentine Nebut
A CSP Approach for Metamodel Instantiation. ICTAI (2013)
Annie Chateau, Pierre Riou, Eric Rivals
Approximate Common Intervals in Multiple Genome Comparison. BIBM (2011)
Sèverine Bérard, Annie Chateau, Cédric Chauve, Christophe Paul, Eric Tannier
Computation of Perfect DCJ Rearrangement Scenarios with Linear and Circular Chromosomes. J. Comput. Biol. 16 (10) (2009)
Sèverine Bérard, Annie Chateau, Cédric Chauve, Christophe Paul, Eric Tannier
Perfect DCJ Rearrangement. RECOMB-CG (2008)
Mahdi Belcaid, Anne Bergeron, Annie Chateau, Cédric Chauve, Yannick Gingras, Guylaine Poisson, M. Vendette
Exploring Genome Rearrangements using Virtual Hybridization. APBC (2007)
Guillaume Blin, Annie Chateau, Cédric Chauve, Yannick Gingras
Inferring Positional Homologs with Common Intervals of Sequences. Comparative Genomics (2006)
Annie Chateau, Malika More
The ultra-weak Ash conjecture and some particular cases. Math. Log. Q. 52 (1) (2006)
Anne Bergeron, Mathieu Blanchette, Annie Chateau, Cédric Chauve
Reconstructing Ancestral Gene Orders Using Conserved Intervals. WABI (2004)
Annie Chateau
On the complexity of decision using destinies in H-bounded structures. Theor. Comput. Sci. 322 (1) (2004)

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Publication Activity (10 Years)

Top Topics

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Annie Chateau