Stein Aerts

Publication Activity (10 Years)

Years Active: 2002-2019
Publications (10 Years): 3

Top Topics

Transcription Factors

Bayesian Inference

Gene Regulatory

Regulatory Networks

Top Venues

PLoS Comput. Biol.

Nucleic Acids Res.

Publications

Thomas Moerman, Sara Aibar Santos, Carmen Bravo González-Blas, Jaak Simm, Yves Moreau, Jan Aerts, Stein Aerts
GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks. Bioinform. 35 (12) (2019)
Dmitry Svetlichnyy, Hana Imrichová, Mark Fiers, Zeynep Kalender Atak, Stein Aerts
-Regulatory Mutations Using Transcription Factor Specific Random Forest Models. PLoS Comput. Biol. 11 (11) (2015)
Hana Imrichová, Gert Hulselmans, Zeynep Kalender Atak, Delphine Potier, Stein Aerts
i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Rekin's Janky, Annelien Verfaillie, Hana Imrichová, Bram Van de Sande, Laura Standaert, Valerie Christiaens, Gert Hulselmans, Koen Herten, Marina Naval Sanchez, Delphine Potier, Dmitry Svetlichnyy, Zeynep Kalender Atak, Mark Fiers, Jean-Christophe Marine, Stein Aerts
iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections. PLoS Comput. Biol. 10 (7) (2014)
Obi L. Griffith, Stephen B. Montgomery, Bridget Bernier, Bryan Chu, Katayoon Kasaian, Stein Aerts, Shaun Mahony, Monica C. Sleumer, Mikhail Bilenky, Maximilian Haeussler, Malachi Griffith, Steven M. Gallo, Belinda Giardine, Bart Hooghe, Peter Van Loo, Enrique Blanco, Amy Ticoll, Stuart Lithwick, Elodie Portales-Casamar, Ian J. Donaldson, Gordon Robertson, Claes Wadelius, Pieter J. De Bleser, Dominique Vlieghe, Marc S. Halfon, Wyeth W. Wasserman, Ross C. Hardison, Casey M. Bergman, Steven J. M. Jones
ORegAnno: an open-access community-driven resource for regulatory annotation. Nucleic Acids Res. 36 (Database-Issue) (2008)
Léon-Charles Tranchevent, Roland Barriot, Shi Yu, Steven Van Vooren, Peter Van Loo, Bert Coessens, Bart De Moor, Stein Aerts, Yves Moreau
ENDEAVOUR update: a web resource for gene prioritization in multiple species. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Michal Dabrowski, Stein Aerts, Bozena Kaminska
Prediction of a key role of motifs binding E2F and NR2F in down-regulation of numerous genes during the development of the mouse hippocampus. BMC Bioinform. 7 (2006)
Stein Aerts, Peter Van Loo, Gert Thijs, Herbert Mayer, Rainer de Martin, Yves Moreau, Bart De Moor
TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Stein Aerts, Peter Van Loo, Yves Moreau, Bart De Moor
A genetic algorithm for the detection of new cis-regulatory modules in sets of coregulated genes. Bioinform. 20 (12) (2004)
Bert Coessens, Gert Thijs, Stein Aerts, Kathleen Marchal, Frank De Smet, Kristof Engelen, Patrick Glenisson, Yves Moreau, Janick Mathys, Bart De Moor
INCLUSive: a web portal and service registry for microarray and regulatory sequence analysis. Nucleic Acids Res. 31 (13) (2003)
Stein Aerts, Peter Van Loo, Gert Thijs, Yves Moreau, Bart De Moor
Computational detection of cis-regulatory modules. ECCB (2003)
Stein Aerts, Peter Antal, Dirk Timmerman, Bart De Moor, Yves Moreau
Web-based Data Collection for Uterine Adnexal Tumors: A Case Study. CBMS (2002)