Stuart L. Moodie

Publication Activity (10 Years)

Years Active: 2006-2020
Publications (10 Years): 2

Top Topics

Software Environment

High Throughput

Biological Systems

Top Venues

J. Integr. Bioinform.

Publications

Lucian P. Smith, Stuart L. Moodie, Frank T. Bergmann, Colin S. Gillespie, Sarah M. Keating, Matthias König, Chris J. Myers, Maciek J. Swat, Darren J. Wilkinson, Michael Hucka
Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1. J. Integr. Bioinform. 17 (2-3) (2020)
Adrien Rougny, Vasundra Touré, Stuart L. Moodie, Irina Balaur, Tobias Czauderna, Hanna Borlinghaus, Ugur Dogrusoz, Alexander Mazein, Andreas Dräger, Michael L. Blinov, Alice Villéger, Robin Haw, Emek Demir, Huaiyu Mi, Anatoly A. Sorokin, Falk Schreiber, Augustin Luna
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0. J. Integr. Bioinform. 16 (2) (2019)
Stuart L. Moodie, Nicolas Le Novère, Emek Demir, Huaiyu Mi, Alice Villéger
Systems Biology Graphical Notation: Process Description language Level 1 Version 1.3. J. Integr. Bioinform. 12 (2) (2015)
Huaiyu Mi, Falk Schreiber, Stuart L. Moodie, Tobias Czauderna, Emek Demir, Robin Haw, Augustin Luna, Nicolas Le Novère, Anatoly A. Sorokin, Alice Villéger
Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2 . J. Integr. Bioinform. 12 (2) (2015)
Anatoly A. Sorokin, Nicolas Le Novère, Augustin Luna, Tobias Czauderna, Emek Demir, Robin Haw, Huaiyu Mi, Stuart L. Moodie, Falk Schreiber, Alice Villéger
Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2. J. Integr. Bioinform. 12 (2) (2015)
Natallia Kokash, Stuart L. Moodie, Mike K. Smith, Nick Holford
Implementing a Domain-specific Language for Model-based Drug Development. EUSPN/ICTH (2015)
Frank T. Bergmann, Richard R. Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project. BMC Bioinform. 15 (2014)
Frank T. Bergmann, Richard Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère
COMBINE archive: One File To Share Them All. CoRR (2014)
Martijn P. van Iersel, Alice Villéger, Tobias Czauderna, Sarah E. Boyd, Frank T. Bergmann, Augustin Luna, Emek Demir, Anatoly A. Sorokin, Ugur Dogrusöz, Yukiko Matsuoka, Akira Funahashi, Mirit I. Aladjem, Huaiyu Mi, Stuart L. Moodie, Hiroaki Kitano, Nicolas Le Novère, Falk Schreiber
Software support for SBGN maps: SBGN-ML and LibSBGN. Bioinform. 28 (15) (2012)
Laurence Loewe, Maria Luisa Guerriero, Steven Watterson, Stuart L. Moodie, Peter Ghazal, Jane Hillston
Translation from the Quantified Implicit Process Flow Abstraction in SBGN-PD Diagrams to Bio-PEPA Illustrated on the Cholesterol Pathway. Trans. Comp. Sys. Biology 13 (2011)
Laurence Loewe, Stuart L. Moodie, Jane Hillston
Quantifying the implicit process flow abstraction in SBGN-PD diagrams with Bio-PEPA COMPMOD (2009)
Stuart L. Moodie, Anatoly A. Sorokin, Igor Goryanin, Peter Ghazal
A Graphical Notation to describe the Logical Interactions of Biological Pathways. J. Integr. Bioinform. 3 (2) (2006)
G. R. Grimes, T. Q. Wen, Muriel Mewissen, Robert M. Baxter, Stuart L. Moodie, J. S. Beattie, Peter Ghazal
PDQ Wizard: automated prioritization and characterization of gene and protein lists using biomedical literature. Bioinform. 22 (16) (2006)